Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0598.Seq
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.1  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   3.4  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   5.9  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   7.8  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   7.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   7.8  

>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 475 WNPGTSSPTAGSRESQEXXRPSVTPDMPL-FNTPQIPSIARGVFIEFSRGITTPMASIAK 299
           ++P   SP A  R S     P+ +   P  +NTP  P+       E+S  ++ P + +A+
Sbjct: 177 YSPAVKSPAA-QRRSSSYMVPANSRGSPANYNTPYYPTAIPPPIEEYSPSVSLPTSPVAE 235


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 226 LQYDKIKDMLSNIPANGPNSFRSQFSQWK 312
           L++D+I   L+++P +G  +FR   S W+
Sbjct: 262 LKFDRI---LADVPCSGDGTFRKNLSLWR 287


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 221 PVPTK**RVIPRPTAMNKFAIIDTGAKYLRFR 126
           P PT      P+ TA++KF++     +  RFR
Sbjct: 121 PDPTNVFEKFPQETALSKFSVDGLNVRQFRFR 152


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 121 WIRNLKYLAPVSMIANLFMAVGLGITL 201
           W   L  + P+SM  NL   +GLG  +
Sbjct: 33  WWNQLLKVIPMSMAPNLITLIGLGFVV 59


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 258 KHPSEWPEFFSLTIFAMEAIGVVMPLENSMKTPRA 362
           K P+  PE  SL+ + M++     P +N+M+ P +
Sbjct: 22  KRPTMLPENLSLSNYDMDSFLGQFPSDNNMQLPHS 56


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 265 PANGPNSFRSQFSQWKPSEL*CLS 336
           P N P  F  ++S+WKP +L  LS
Sbjct: 229 PKN-PQLFALKYSEWKPGQLAVLS 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,065
Number of Sequences: 5004
Number of extensions: 39860
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)