Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0598.Seq
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708     30   1.1  
10_08_0844 - 20963774-20963792,20964111-20964256,20964787-209649...    29   1.5  
05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441     29   1.5  
03_01_0525 + 3952095-3952217,3953131-3953614,3953695-3953750,395...    28   3.4  
05_07_0105 - 27716126-27716218,27716548-27716658,27716764-277168...    28   4.5  
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    27   7.9  

>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
          Length = 2033

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 243  QGHAFKHPSEWPEFFSLTIFAMEAIGVVMPLENSMK 350
            Q H  KH ++   + SL +  ++A+G+VMPL   M+
Sbjct: 1766 QLHHLKHHADVAPYVSLVMLGVQALGLVMPLFAGME 1801


>10_08_0844 -
           20963774-20963792,20964111-20964256,20964787-20964962,
           20965061-20965216,20965287-20967102
          Length = 770

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 442 SRESQEXXRPSVTPDMPLFNTP 377
           +R  Q+  +P +TPD PLF++P
Sbjct: 75  ARRRQQAEQPEITPDHPLFSSP 96


>05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441
          Length = 757

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 324 VMPLENSMKTPRAMLGICGVLNKGMSGVTLGLHXSWLSRLPAVGEEV 464
           ++ ++N    PR++  +C  LN+           SWLS  PA G  V
Sbjct: 582 LLSIKNLPSRPRSLFDVCCGLNEDEDDAACLTRSSWLSLRPAAGAYV 628


>03_01_0525 +
           3952095-3952217,3953131-3953614,3953695-3953750,
           3953942-3954018,3954862-3954958,3955274-3955407,
           3955760-3955825,3955954-3956044
          Length = 375

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 418 RPSVTPDMPLFNTPQIPSIARGVFIEFSRGITTPMASIAKIVSEKNSGHSLG 263
           RP   PD  +F     P +   +  E  R ++ P    AK+V++ N+G S G
Sbjct: 102 RPDAGPDHSIFVGDLAPDVTDYLLQETFR-VSYPSVKGAKVVTDPNTGRSKG 152


>05_07_0105 -
           27716126-27716218,27716548-27716658,27716764-27716815,
           27716895-27717034,27717298-27717422,27717514-27717638,
           27717853-27717898,27718374-27718947
          Length = 421

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 281 ILFAHNFRNGSHRSCDASRKLNE 349
           I+ + + RNGS R C+A +KLN+
Sbjct: 240 IMTSESCRNGSERCCEALQKLNK 262


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +2

Query: 242 SRTCFQTSQRMARILFAHNFRNGSHRSCDASRKL---NEDPSCDARYLRCIEQRHVR 403
           S+   + SQ + R  + H+F N  +R     RKL   N D S D   L C +  H R
Sbjct: 259 SKKLVEGSQYLERGRYFHSFANICYRYLKIGRKLADSNHDMSPDP-LLNCFQDHHPR 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,649,256
Number of Sequences: 37544
Number of extensions: 252400
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)