Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0598.Seq
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08)              37   0.010
SB_26951| Best HMM Match : CUB (HMM E-Value=0)                         28   3.5  
SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.5  
SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)                     27   6.1  
SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31)             27   6.1  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 27   6.1  
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)              27   8.0  
SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21)               27   8.0  

>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 22/48 (45%), Positives = 28/48 (58%)
 Frame = +3

Query: 276 PEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLGL 419
           P FF + +F  E IGVV+PLEN M  P+       VLN GM G+ L +
Sbjct: 179 PLFFGMVVFTFEGIGVVLPLENQMARPQHFR---LVLNVGM-GIILAI 222



 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 115 MAWIRNLKYLAPVSMIANLFMAVGLGITLYYL 210
           +++I +L+ L+ +S +AN+   +GL IT  YL
Sbjct: 128 LSYIHSLRVLSVLSTMANICCLIGLVITFQYL 159


>SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08)
          Length = 373

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 21/46 (45%), Positives = 25/46 (54%)
 Frame = +3

Query: 276 PEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTL 413
           P  F   +F  E IGV++P+EN M  PR       VL  GMS VTL
Sbjct: 195 PLAFGAVVFTYEGIGVILPVENMMAIPRRFR---WVLYAGMSLVTL 237


>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
          Length = 794

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 302 ENCERKEFGPFAGMFESMSLILSYCSCPVPTK 207
           ++C+++ F  F G   S  LI++YC   +P K
Sbjct: 120 DDCDKENFKVFDGSDTSAPLIVNYCKNKLPPK 151


>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 267 SEWPEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTLG 416
           S +P FF     A + IG ++P+E+SM   R    +   L  G+    LG
Sbjct: 582 STFPVFFGQVTSAYQGIGTLIPIESSMAENRHRYPLYLHLALGLLSAILG 631


>SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +1

Query: 121 WIRNLKYLAPVSMIANLFMAVGLGITLYYLVGTGQLQYDKIKDMLSNIPANGPNSF 288
           +I  L  +A +SMIA L +   + +TL Y +    L YD+    ++NIP    N+F
Sbjct: 240 FITRLSLIAWMSMIAVLALMSSIAVTLAYCI----LNYDRWS--INNIPTFDGNTF 289


>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
          Length = 2086

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 472 NPGTSSPTAGSRESQEXXR 416
           +PGT SP+AG  ES E  R
Sbjct: 503 SPGTQSPSAGQEESMENDR 521


>SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31)
          Length = 541

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 326 HNSDGFHCENCERKEFGPFAGMFESMSLILSYCSC 222
           HN+ G +CE C++  F P  G+ ++       C+C
Sbjct: 453 HNTAGINCERCKQGYFRP-RGVDKTSPFACRACNC 486


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 326 HNSDGFHCENCERKEF 279
           HN+ G HC+NC  K +
Sbjct: 368 HNTQGDHCQNCTAKHY 383


>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
          Length = 974

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 115 MAWIRNLKYLAPVSMIANLFMAVG-LGITLYYLVG 216
           MA+IR ++ L P+S +AN+ +  G  G+ +  L G
Sbjct: 590 MAFIRKIRKLGPISGLANIALLAGFFGLLVQILDG 624


>SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21)
          Length = 457

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 312 AIGVVM-PLENSMKTPRAMLGICGVLNKGMSGVTLGL 419
           A G VM PL+N  +T  +  G   +LN  +SG+ +GL
Sbjct: 160 ATGPVMNPLDNRRETGGSSSGCGALLNGDISGIRIGL 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,908
Number of Sequences: 59808
Number of extensions: 300585
Number of successful extensions: 715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)