Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0598.Seq
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical ... 45 2e-05
Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical pr... 39 0.002
AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical ... 39 0.002
AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical... 38 0.003
U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical pr... 37 0.009
U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical pr... 37 0.009
Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical pr... 30 1.00
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 29 1.7
AL110485-31|CAB60352.2| 280|Caenorhabditis elegans Hypothetical... 29 2.3
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z66494-3|CAA91258.2| 520|Caenorhabditis elegans Hypothetical pr... 28 3.1
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 3.1
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 27 5.3
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 27 5.3
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 27 5.3
AL032640-2|CAA21643.2| 502|Caenorhabditis elegans Hypothetical ... 27 7.0
>AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical
protein Y43F4B.7 protein.
Length = 455
Score = 45.2 bits (102), Expect = 2e-05
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +3
Query: 255 FKHPSEWPEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLN 389
F ++ P FF +FA E + V+MP+EN M++P A + GVLN
Sbjct: 239 FGKATDLPLFFGTVMFAFEGVAVIMPIENRMQSPHAFISWNGVLN 283
>Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical
protein H32K16.1 protein.
Length = 481
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 297 IFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTL 413
I++ E +V+P+ENS+K P+ M G GVL+ M+ VT+
Sbjct: 270 IYSFEGQAMVLPMENSLKYPKDMTGATGVLSTAMNLVTV 308
>AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical
protein T27A1.5 protein.
Length = 449
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +3
Query: 252 AFKHPSEWPEFFSLTIFAMEAIGVVMPLENSMKTPRAMLGICGVLN 389
AF P FF +FA E + VV+P+EN M P + GVLN
Sbjct: 228 AFGAVENLPLFFGTVMFAFEGVAVVLPIENQMNEPIHFITPNGVLN 273
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +1
Query: 4 VYTVIIARNILQIIQFYCGDIINERFXXXXXXXXXXXMAWIRNLKYLAPVSMIANLFMAV 183
VY V +A N+ Q I++ + IR LK LAP++ +AN +
Sbjct: 148 VYFVFMADNLKQFFDQTSSIHISQAGWIALLLIPISALCTIRELKALAPLAAVANFVYII 207
Query: 184 GLGITL 201
+ I L
Sbjct: 208 AVVIVL 213
>AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical
protein Y38H6C.17 protein.
Length = 454
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +3
Query: 297 IFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGV 407
I++ E +V+PLENS+K P+ M G+ GVL+ M+ V
Sbjct: 242 IYSFEGQAMVLPLENSLKHPQDMRGLTGVLSTAMNVV 278
>U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical
protein C44B7.6b protein.
Length = 434
Score = 36.7 bits (81), Expect = 0.009
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +3
Query: 297 IFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTL 413
++A+E +V+PLEN MK P M G GVL+ G+ V +
Sbjct: 226 LYALEGQAMVLPLENRMKKPEDMKGPFGVLSVGVGMVVV 264
>U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical
protein C44B7.6a protein.
Length = 489
Score = 36.7 bits (81), Expect = 0.009
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +3
Query: 297 IFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGMSGVTL 413
++A+E +V+PLEN MK P M G GVL+ G+ V +
Sbjct: 281 LYALEGQAMVLPLENRMKKPEDMKGPFGVLSVGVGMVVV 319
>Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical
protein F59B2.2 protein.
Length = 460
Score = 29.9 bits (64), Expect = 1.00
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 291 LTIFAMEAIGVVMPLENSMKTPRAMLGICGVLNKGM 398
++++A E +++P+EN + P A L GVL+ M
Sbjct: 242 MSMYAFEGQTMILPIENKLDNPAAFLAPFGVLSTTM 277
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 368 EHRTRGLH*VFERHHNSDGFHCENCERKEFG 276
+H R H E HH +D H EN +RK+ G
Sbjct: 82 DHARRRRHHNHEGHHGNDMKHRENMDRKKHG 112
>AL110485-31|CAB60352.2| 280|Caenorhabditis elegans Hypothetical
protein Y46G5A.7 protein.
Length = 280
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 210 SRYWTTAIR*DQGHAFKHPSEWPEFFSLTIFAME 311
SR T A++ GHA K SE FF L I+A +
Sbjct: 36 SRKTTCAVKQSIGHANKRQSEDRRFFELNIYACQ 69
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFG 276
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFG 276
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 28.3 bits (60), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFG 276
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFG 276
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical protein
ZC101.2b protein.
Length = 1160
Score = 28.3 bits (60), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFG 276
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 28.3 bits (60), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFG 276
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFG 276
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 28.3 bits (60), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFG 276
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 28.3 bits (60), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFG 276
HN++G HCE C++ +G
Sbjct: 1032 HNTEGTHCERCKKGYYG 1048
>Z66494-3|CAA91258.2| 520|Caenorhabditis elegans Hypothetical
protein C34C6.3 protein.
Length = 520
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 114 HGLDSKS*VLSSCVNDREFIHGCGSRDHPLLLSRYW 221
H +D +++S NDR FI SRD L YW
Sbjct: 326 HPMDCVDVIMASVRNDRLFISDFYSRDRSTPLEDYW 361
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 28.3 bits (60), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFG 276
HN++G HCE C++ +G
Sbjct: 1031 HNTEGTHCERCKKGYYG 1047
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFGPFAGMFESMSLILSYCSC 222
HN++GF+CE C+ + P +G+ C C
Sbjct: 392 HNTEGFNCERCKDGYYRP-SGLSHYREDACRTCEC 425
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFGPFAGMFESMSLILSYCSC 222
HN++GF+CE C+ + P +G+ C C
Sbjct: 392 HNTEGFNCERCKDGYYRP-SGLSHYREDACRTCEC 425
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 326 HNSDGFHCENCERKEFGPFAGMFESMSLILSYCSC 222
HN++GF+CE C+ + P +G+ C C
Sbjct: 392 HNTEGFNCERCKDGYYRP-SGLSHYREDACRTCEC 425
>AL032640-2|CAA21643.2| 502|Caenorhabditis elegans Hypothetical
protein Y43F8A.2 protein.
Length = 502
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 469 PGTSSPTAGSRESQEXXRPSVTPDMPLFNTPQIPS 365
P T+ PTAGS ++ P+ P N P P+
Sbjct: 25 PSTADPTAGSTDTSATPMPTDAPTAAPANPPPPPA 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,837,119
Number of Sequences: 27780
Number of extensions: 221515
Number of successful extensions: 529
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -