Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0598.Seq
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   5.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   9.1  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   9.1  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   9.1  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 50  STAAILSMNVFSL*YYWS 103
           STA+IL++ V SL  YW+
Sbjct: 130 STASILNLCVISLDRYWA 147


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 407 NTGHAFVQYTADTEHR 360
           N GH  + Y  D +HR
Sbjct: 366 NFGHVAISYIHDPDHR 381


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = -1

Query: 329 HHNSDGFHCENCERK 285
           H     +HC +C+R+
Sbjct: 32  HTGEKPYHCSHCDRQ 46


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 268 LGCLKAC 248
           LGCLKAC
Sbjct: 66  LGCLKAC 72


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 268 LGCLKAC 248
           LGCLKAC
Sbjct: 66  LGCLKAC 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,481
Number of Sequences: 438
Number of extensions: 3050
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)