Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0598.Seq
(479 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01810.1 68417.m00238 protein transport protein-related relat... 29 1.2
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 28 3.7
At1g58310.1 68414.m06633 F-box family protein contains F-box dom... 28 3.7
At5g41720.1 68418.m05073 F-box family protein contains Pfam PF00... 27 5.0
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 27 5.0
At5g54780.1 68418.m06824 RabGAP/TBC domain-containing protein co... 27 6.5
At4g34570.1 68417.m04912 bifunctional dihydrofolate reductase-th... 27 6.5
At1g62270.1 68414.m07025 F-box family protein contains Pfam:PF00... 27 6.5
At1g10090.1 68414.m01137 expressed protein 27 6.5
At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident... 27 8.7
At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3) ident... 27 8.7
At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3) ident... 27 8.7
At2g16370.1 68415.m01873 bifunctional dihydrofolate reductase-th... 27 8.7
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom... 27 8.7
>At4g01810.1 68417.m00238 protein transport protein-related related
to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
Length = 880
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 472 NPGTSSPTAGSRESQEXXRPSVTPDMPLFNTPQIPS 365
+P SP G R R S P P+FNTP P+
Sbjct: 64 SPSLLSPANGIRTGSPIPRLSTPPGPPVFNTPVKPA 99
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 415 PSVTPDMPLFNTPQIPSIARGVFIEFSRGITTPMA 311
P VT +P +TP I + G EFS +T P++
Sbjct: 2695 PVVTSSIPQASTPSIHVLEPGESAEFSASLTDPIS 2729
>At1g58310.1 68414.m06633 F-box family protein contains F-box domain
Pfam:PF00646
Length = 505
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 357 RAMLGICGVLNKGMSGVTLGLHXSWLSRLPA 449
R + I VL +G+S + L +H W S LP+
Sbjct: 118 RIICWILKVLERGVSDLELDMHLKWKSSLPS 148
>At5g41720.1 68418.m05073 F-box family protein contains Pfam
PF00646: F-box domain; similar to unknown protein
(gb|AAD32901.1);
Length = 186
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -1
Query: 263 MFESMSLILSYCSCPVPTK**RVIPRPTAMNKFAIIDTGAKYLR---FRIQAMRISGT 99
+F+ I Y C TK R+IP P +F + TG + FR + +R+S T
Sbjct: 113 VFKGRQKIPDYIVCKPATKQYRIIPNP--KTRFGTVATGLMVISSNPFRYKIIRVSDT 168
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary
28614
Length = 1457
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 241 IKDMLSNIPANGPNSFRSQFSQWKPSEL 324
+K L P N +++RS+F +W PSE+
Sbjct: 747 LKTALIVTPVNVLHNWRSEFEKWMPSEV 774
>At5g54780.1 68418.m06824 RabGAP/TBC domain-containing protein
contains similarity to SP|P09379 GTPase-activating
protein GYP7 (Fragment) {Yarrowia lipolytica}; contains
Pfam profile PF00566: TBC domain
Length = 435
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 127 RNLKYLAPVSMIANLFMAVGLG--ITLYYLVGTGQLQYDKIKDMLSNIPANGPNSFRSQF 300
R L+Y + +F +G G IT + G+ YD I +N+ ANG + F+
Sbjct: 96 RRLQYASWKEECKQMFPVIGSGGFITAPVITNKGEPIYDPIVLQETNLGANGSDFFKDLA 155
Query: 301 SQ 306
S+
Sbjct: 156 SR 157
>At4g34570.1 68417.m04912 bifunctional dihydrofolate
reductase-thymidylate synthase 2 / DHFR-TS (THY-2)
identical to SP|Q05763
Length = 565
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 217 TGQLQYDKIKDMLSNIPANGPNSFRSQFSQWKPSEL 324
TGQ +D++ D+++ I N P+ R S W PS+L
Sbjct: 406 TGQ-GFDQLLDVINKIK-NNPDDRRIIMSAWNPSDL 439
>At1g62270.1 68414.m07025 F-box family protein contains Pfam:PF00646
F-box domain
Length = 383
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 226 LQYDKIKDMLSNIPANGPNSFRSQFSQW 309
L +D ++D+L+ +PA RS QW
Sbjct: 12 LPWDLVEDILARVPATSLKRLRSTCKQW 39
>At1g10090.1 68414.m01137 expressed protein
Length = 762
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 287 FAHNFRNGSHRSCDASRKLNEDPSCDARYLRCI 385
F H N + R C A + ++ D SC+ C+
Sbjct: 229 FIHRLMNETERMCQAIKHVSPDLSCNPSLKSCV 261
>At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 485
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 156 NDREFIHGCGSRD 194
NDR F+HGCG D
Sbjct: 69 NDRSFVHGCGVVD 81
>At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 514
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 156 NDREFIHGCGSRD 194
NDR F+HGCG D
Sbjct: 69 NDRSFVHGCGVVD 81
>At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 483
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 156 NDREFIHGCGSRD 194
NDR F+HGCG D
Sbjct: 69 NDRSFVHGCGVVD 81
>At2g16370.1 68415.m01873 bifunctional dihydrofolate
reductase-thymidylate synthase 1 / DHFR-TS (THY-1)
identical to GP:289193:L08593 [SP|Q05762]
Length = 519
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 217 TGQLQYDKIKDMLSNIPANGPNSFRSQFSQWKPSEL 324
TGQ +D++ D++ I N P+ R S W PS+L
Sbjct: 360 TGQ-GFDQLVDVIDKIK-NNPDDRRIIMSAWNPSDL 393
>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
domain-containing protein similar to nuclear protein
5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
PF02373: jmjC domain
Length = 883
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 84 HYNITGPTYSHGLDSKS*VLSSCVNDRE 167
HY G Y HGLD+ LSS D E
Sbjct: 381 HYVDRGHRYMHGLDAAEPSLSSTFEDEE 408
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,216,512
Number of Sequences: 28952
Number of extensions: 205925
Number of successful extensions: 579
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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