Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0597.Seq
         (469 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121654-1|AAM51981.1|  333|Drosophila melanogaster RE02181p pro...    29   4.1  
AE013599-3158|AAF46696.3|  333|Drosophila melanogaster CG9480-PB...    29   4.1  
AE014298-2815|AAF48932.3|  347|Drosophila melanogaster CG7990-PB...    28   5.5  
AE014298-2814|AAN09483.1|  325|Drosophila melanogaster CG7990-PA...    28   5.5  

>AY121654-1|AAM51981.1|  333|Drosophila melanogaster RE02181p
           protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 252 KECIFLDANCLLLYYCGELHE 190
           ++C+FLDA+ L+L  C EL E
Sbjct: 96  EKCVFLDADTLVLQNCDELFE 116


>AE013599-3158|AAF46696.3|  333|Drosophila melanogaster CG9480-PB,
           isoform B protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 252 KECIFLDANCLLLYYCGELHE 190
           ++C+FLDA+ L+L  C EL E
Sbjct: 96  EKCVFLDADTLVLQNCDELFE 116


>AE014298-2815|AAF48932.3|  347|Drosophila melanogaster CG7990-PB,
           isoform B protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 195 VTLHNNKEANNLHLKIYIPFNIK*ICYVVQYINLKQLL 308
           VT  +N+E   +H +I+I F +  +CY++  I L  +L
Sbjct: 212 VTYISNRENYPVHERIFITFMVCSLCYMLATIKLNGIL 249


>AE014298-2814|AAN09483.1|  325|Drosophila melanogaster CG7990-PA,
           isoform A protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 195 VTLHNNKEANNLHLKIYIPFNIK*ICYVVQYINLKQLL 308
           VT  +N+E   +H +I+I F +  +CY++  I L  +L
Sbjct: 190 VTYISNRENYPVHERIFITFMVCSLCYMLATIKLNGIL 227


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,112,754
Number of Sequences: 53049
Number of extensions: 268656
Number of successful extensions: 568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1580609772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)