Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0597.Seq
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical...    27   5.1  
AC087079-16|AAO12401.2|  509|Caenorhabditis elegans Hypothetical...    27   5.1  
U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    27   8.9  

>AL033514-32|CAA22112.1|  344|Caenorhabditis elegans Hypothetical
           protein Y75B8A.34 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = -3

Query: 296 KIYILHYVTYSLYIKRNVYF*MQIVCFFIIVESYMKVVIRSIF 168
           K+++   +T  LY    +++  + + FF+I E+ +K+ + SIF
Sbjct: 254 KVFVQLLITAILYGVTQIFY--EAIAFFLITETSLKLFLISIF 294


>AC087079-16|AAO12401.2|  509|Caenorhabditis elegans Hypothetical
           protein Y37E3.16 protein.
          Length = 509

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 239 F*MQIVCFFIIVESYMKVVIRSIFLLKLYKLDP 141
           F  Q VC FIIV +    VI S+ L +LY   P
Sbjct: 173 FKWQYVCGFIIVYNLASWVIESMILRRLYNETP 205


>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
 Frame = -1

Query: 268 IHFILKGMYIFRCKLFASLLLWRVT----*KWLLEAFFF*NCIS*TLF---FLIYSEGLL 110
           I+ +L    IF C  F    +W  T     K LL  +FF       LF   +L+  E  L
Sbjct: 27  IYVVLSVTSIFTCSYFIKTFIWNSTFHPNFKLLLTMYFFAAIFHSFLFTASYLMMIERFL 86

Query: 109 VLQTKSDFYIHKV 71
             QT  D ++  V
Sbjct: 87  DYQTDCDIHVSMV 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,429,547
Number of Sequences: 27780
Number of extensions: 160936
Number of successful extensions: 256
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)