Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0595.Seq
         (489 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DI96 Cluster: Chromosome undetermined scaffold_51, wh...    36   0.48 
UniRef50_UPI0000E4975E Cluster: PREDICTED: similar to laminin A ...    33   2.6  
UniRef50_UPI00006CCA7F Cluster: hypothetical protein TTHERM_0028...    32   7.9  
UniRef50_O28270 Cluster: Heme biosynthesis protein; n=1; Archaeo...    32   7.9  

>UniRef50_A0DI96 Cluster: Chromosome undetermined scaffold_51, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_51,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1184

 Score = 35.9 bits (79), Expect = 0.48
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +3

Query: 9   DSNEFESRGCFRLHLGLLL-CQYCSYTSWGYNSDGCCKCRXDSKILCR*IECTGRCRK*L 185
           D N+    GC++     +  CQ C +   GY    C +C    K+     EC  +C    
Sbjct: 383 DGNQIRFDGCYQCQFSCISECQLCEF---GY----CLQCNPSFKLSYDKQECLPQCNNNE 435

Query: 186 YSNHSHQYYDDNDYC 230
            S +   Y+D ND C
Sbjct: 436 ISKYYGYYHDSNDEC 450


>UniRef50_UPI0000E4975E Cluster: PREDICTED: similar to laminin A
           chain, putative; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to laminin A chain, putative -
           Strongylocentrotus purpuratus
          Length = 543

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 66  CQYCSYTSWGYNSDGCCKCRXDSKILCR*IECTGRC 173
           C  C +  W Y  +GC +C  D K+ C     TG C
Sbjct: 141 CDACLHGYWNYGPNGCYECNCDPKLRCD--PYTGEC 174


>UniRef50_UPI00006CCA7F Cluster: hypothetical protein
           TTHERM_00283730; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00283730 - Tetrahymena
           thermophila SB210
          Length = 1345

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 66  CQYCSYTSWGY-NSDGCCKCRXD-SKILCR*IECTGRCRK 179
           CQYC+Y S+GY N+D    C  + S+  C+       C+K
Sbjct: 501 CQYCNYGSYGYKNADNKIICTYNYSQYFCQQFNLNHECQK 540


>UniRef50_O28270 Cluster: Heme biosynthesis protein; n=1;
           Archaeoglobus fulgidus|Rep: Heme biosynthesis protein -
           Archaeoglobus fulgidus
          Length = 468

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 93  GYNSDGCCKCRXDSKILCR*IECTGR 170
           GY SD C KCR  +K++ + IE  GR
Sbjct: 45  GYRSDACWKCRAAAKVVKKVIEAGGR 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,702,699
Number of Sequences: 1657284
Number of extensions: 2889368
Number of successful extensions: 6531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6530
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)