Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0595.Seq
         (489 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.1  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   2.6  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   2.6  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   4.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   6.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -1

Query: 96   IPSWYSYNTDIVANQDGGENSHATQTHC 13
            +  + +Y+ +++A   GG+    T  HC
Sbjct: 1167 LKKYTNYSMEVLAYTSGGDGVRTTPIHC 1194


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -1

Query: 93  PSWYSYNTDIVANQDGGENSHATQT 19
           P WY +   +    D G+N   T T
Sbjct: 224 PQWYQHQPLLFTYTDDGKNQQRTGT 248


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 63  LCQYCSYTSWGYNSDGCCK 119
           LC +  Y   G NSDG  K
Sbjct: 52  LCTHVHYAFLGVNSDGTLK 70


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 75  CSYTSWGYNSDG 110
           C Y SWG N  G
Sbjct: 25  CYYASWGANRPG 36


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 64  SSKPRWRRKQPRDSNS 17
           S + +WR  QP  SN+
Sbjct: 359 SDEQQWRNNQPSTSNN 374


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 102 CCIPSWYSYNTDIVANQDGGENSHATQ 22
           C I S YS    + A   GG++S   Q
Sbjct: 1   CSIDSKYSNEDTLGARSPGGDHSENMQ 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,607
Number of Sequences: 336
Number of extensions: 816
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)