Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0595.Seq
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   2.7  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   6.1  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   8.1  

>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 96  IPSWYSYNTDIVANQDGGENSHATQTHCC 10
           +P WYS+N +  A +DG +++ A     C
Sbjct: 222 LPGWYSHNAE--AEKDGKDSTEAFYCEVC 248


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = +3

Query: 66  CQYCSYTSWGYNSDGC-CK 119
           C YC    WG +  GC CK
Sbjct: 411 CSYCREIIWGLSKRGCVCK 429


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 93  PSWYSYNTDIVANQDGGENSHATQTH 16
           P ++S N+D+  N +G  +S+  +TH
Sbjct: 110 PPFHSANSDVSNNSNGALSSNMLKTH 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 941,797
Number of Sequences: 5004
Number of extensions: 12041
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)