Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0595.Seq
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0588 + 25883705-25883856,25884201-25884422,25885660-258857...    29   2.0  
11_06_0510 + 24420402-24422582                                         29   2.6  

>03_05_0588 +
           25883705-25883856,25884201-25884422,25885660-25885759,
           25885897-25886148
          Length = 241

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 87  WYSYNTDIVANQDGGENS 34
           WYS N D+V  Q GGEN+
Sbjct: 207 WYSDNDDVVEAQGGGENA 224


>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 48  HLGLLLCQYCSYTSWGYNSDGCCKCRXDSKIL 143
           H+   LC Y ++ +   + DGCC C   SK L
Sbjct: 500 HIATDLCFYANHPA-DKDDDGCCSCSSSSKCL 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,464,895
Number of Sequences: 37544
Number of extensions: 87442
Number of successful extensions: 142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)