Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0595.Seq
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    31   0.32 
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop...    28   2.9  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    28   2.9  
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop...    28   2.9  
At3g11800.1 68416.m01446 expressed protein                             28   3.9  

>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
           similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 84  TSWGYNSDGCCKCRXDSKILC 146
           TS+  NSD CC C+ D  +LC
Sbjct: 602 TSFDRNSDDCCFCKMDGSLLC 622


>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 433

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 75  CSYTSWGYNSDGCCKCRXDSKIL 143
           C Y  W Y++DG CK    +K+L
Sbjct: 281 CPYHGWEYSTDGECKKMPSTKLL 303


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 75  CSYTSWGYNSDGCCKCRXDSKIL 143
           C Y  W Y++DG CK    +K+L
Sbjct: 281 CPYHGWEYSTDGECKKMPSTKLL 303


>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 536

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 75  CSYTSWGYNSDGCCKCRXDSKIL 143
           C Y  W Y++DG CK    +K+L
Sbjct: 281 CPYHGWEYSTDGECKKMPSTKLL 303


>At3g11800.1 68416.m01446 expressed protein
          Length = 246

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 96  YNSDGCCKCRXDSKILC 146
           +  DGC KC  DSK +C
Sbjct: 157 WKKDGCSKCSGDSKFVC 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,086,782
Number of Sequences: 28952
Number of extensions: 69922
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)