Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0594.Seq
         (488 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   2.0  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   4.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.0  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 123 LFLVLLKNMIALN 161
           LFL LLKN+ ALN
Sbjct: 10  LFLALLKNISALN 22


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 301 VTDLSSVGNIIKQFGNTVKVDISK 372
           VTDL    N  K+    +K+DI K
Sbjct: 310 VTDLCQEANSTKKLIVKIKIDIDK 333


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 253 DKVSKHLDSFHDTLEKVTDLSSVGNIIKQFGN 348
           DK++  + +F +   ++  + S G +IK F N
Sbjct: 63  DKIANFMLTFFNVSLRIILVFSKGKVIKSFFN 94


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 87  CASLAGAVSCSAIVGTALTICKM 19
           C  L  + SCS   GT   IC++
Sbjct: 237 CHDLVNSFSCSCPSGTLGYICEI 259


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,557
Number of Sequences: 336
Number of extensions: 2211
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)