Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0594.Seq
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    31   0.12 
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.5  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    26   3.5  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   4.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   4.6  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   4.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   6.1  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   8.1  

>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 277 SFHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKGILLDKAKAXEKGVSVAKDL 438
           S+   L   + L SV   +KQ  +      ++ + +L DK K  EK +++ KDL
Sbjct: 107 SYDTVLHDCSSLKSVNEALKQAQDQNLKQTAQLQNLLSDKEKEVEKKITIIKDL 160


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 310  LSSVGNIIKQFGNT--VKVDISKSKGILLDKAKAXEKGVSVAKDLLRDKTEESR 465
            + S G+II +      VK+D+ ++ G  +   +    GV  AKDL+ ++ +E++
Sbjct: 1223 IGSGGSIINKIRKIAQVKIDVPRTPGDEIVVVQGSRAGVVKAKDLIFERLQENQ 1276


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 401 FALSKSIPFDLEISTLTVFPNCLIIFPTDDKSVTFSNVS 285
           ++LSK +P    ++ +TVF N  + F  D++    ++ S
Sbjct: 38  YSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHS 76


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 364 ISKSKGILLDKAKAXEKGVSVAKDLL 441
           ++  +G ++++A    KGV VAK LL
Sbjct: 542 VAPFRGFVMERANLASKGVKVAKTLL 567


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 425 TETPFSIAFALSKSIPFDLEISTLTVFPNCLIIFP 321
           TE   +I+FAL+++I   +EI +      CL+  P
Sbjct: 772 TEFMNAISFALNENIALSMEIGSAYALQVCLLQIP 806


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 428 PKIFYEIKPKK 460
           P +FYEIKPKK
Sbjct: 716 PNLFYEIKPKK 726


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 200  PILDDLIYQVSAATGNQE 253
            P++DD IY++SAA+  Q+
Sbjct: 957  PVIDDSIYELSAASKYQQ 974


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 422 ETPFSIAFALSKSIPFDLEISTLTVFPNCLIIFPTDDKSVTFSNVS*NESRCFET 258
           E P   +FAL +S   DLEI  L V    L   P     ++   +   +S  F+T
Sbjct: 748 ERPIVTSFALRRSAIADLEIKDLLVRKRLLHEEPMTKLDLSTLRLIRTDSEAFDT 802


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,306
Number of Sequences: 5004
Number of extensions: 36435
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)