Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0594.Seq
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248...    31   0.66 
04_03_0453 - 16058125-16058407,16059104-16059507                       29   2.6  
11_06_0404 - 23153454-23154305,23154335-23155627                       28   4.6  

>01_02_0091 -
           11023912-11024017,11024112-11024185,11024478-11024834,
           11024938-11025166,11025468-11025559,11026099-11026326,
           11027108-11027356,11027429-11027471,11027589-11027836,
           11027922-11028035,11028122-11028322,11028417-11028593,
           11028725-11028853,11029210-11029287,11029369-11029464,
           11029563-11029634,11031549-11031677,11032105-11032220,
           11033048-11033204,11033343-11033426,11033513-11033574,
           11034901-11035067,11035162-11035226,11035315-11035371,
           11035547-11035633,11036638-11036703,11036810-11036908
          Length = 1193

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 140 QEHDSAKQTDTNVKTVKLGGPILDDLIYQVSAATGNQEIK 259
           +E D A +T TN +     GP+ DD+ Y V A+     +K
Sbjct: 799 KERDIAMETKTNSEGSFFAGPLYDDIGYTVEASKAGYHLK 838


>04_03_0453 - 16058125-16058407,16059104-16059507
          Length = 228

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 5   AALFTILQIVNAVPTIAEHDTAPASDAQTGDDLHQEIAGA 124
           AAL  +   V AVP + E +T P+ D +      Q +A A
Sbjct: 2   AALLQLAMSVAAVPHLPEEETTPSVDVEIASPDQQHLAAA 41


>11_06_0404 - 23153454-23154305,23154335-23155627
          Length = 714

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +2

Query: 62  DTAPASDAQTGDDLHQEIAGAVLGASQEHDSAKQTDTNVKTVKLGGPILDDLIYQVSAAT 241
           D A   + + G+D+H + A  +    +  +   +  +NV+T   G  I+D+   + S   
Sbjct: 613 DEAREDEPEPGNDIHAQSAADMEITDEAQEGESEPGSNVQTSAAGVEIIDEAQEEESEPG 672

Query: 242 GNQEIKF 262
            N    F
Sbjct: 673 NNVHTPF 679


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,326,506
Number of Sequences: 37544
Number of extensions: 208269
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)