Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0594.Seq
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59295| Best HMM Match : SET (HMM E-Value=0)                         31   0.39 
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.89 
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               29   2.7  
SB_51253| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_28334| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_21581| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_36251| Best HMM Match : BNR (HMM E-Value=1.7e-11)                   27   8.3  
SB_28053| Best HMM Match : MMPL (HMM E-Value=0.097)                    27   8.3  
SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)                     27   8.3  
SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)                      27   8.3  

>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 232 CSNGKPRDKVSKHLDSFHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKG 381
           CS+  P DK +K   S  +T    +   S G +  ++ N   +DI K+ G
Sbjct: 816 CSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKY-NADTIDIQKTSG 864


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 253  DKVSKHLDSFHDTLEKVTDLSS--VGNIIKQFGNTVKVDISKSKGILLDKAKAXEK 414
            DK+ K LD+    +E+     S  +G + ++   + K  ISK +G L DKAKA EK
Sbjct: 1195 DKMKKDLDAQKQAIEESRSEESGIIGEMEEKLKES-KDKISKLEGTLNDKAKALEK 1249


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -3

Query: 189 FTVFTF--VSVCLALSCS*EAPRTAPAIS**RSSPVCASLAGAVSCSAIVGTALTICKMV 16
           FTV     V+ C+ L C+      +  +      P C  L  AVSC A++  A++ C ++
Sbjct: 321 FTVLALRVVTCCVVLCCAVLCRAVSCRVVLCCVVPCCVVLCCAVSCRAVLCRAVSCCAVL 380

Query: 15  KRA 7
            RA
Sbjct: 381 CRA 383


>SB_51253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 35  NAVPTIAEHDTAPASDAQTGDDLHQEIAGAVLGASQEHDSAKQTDTN 175
           N +PT A++DT P  D       H  +A AV+   ++ ++   T  N
Sbjct: 2   NEIPTFADNDTLPIGDPLESTCRHASLALAVVLQRRDWENPGVTQLN 48


>SB_28334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 328 IIKQFGNTVKVDISKSKGILLDKAKAXEKGVSVAKDLLRDKTEES 462
           I K+ G T+ V ISK KG+ +    + +KGV    + +  K +E+
Sbjct: 89  ISKKKGVTMPVVISKKKGVTMPVVISKKKGVQADFNDIESKAQEN 133


>SB_21581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 386 SIPFDLEISTLTVFPNCLIIFPTDDKSVTFSNVS*NESRCFETLSLGF 243
           +IP D   S+     +C +  PTDD   +F+++    S CF T+ + +
Sbjct: 144 TIPTDDARSSFAHIVHCFLTIPTDDARSSFAHI----SHCFLTILIDY 187


>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1984

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -1

Query: 254  SLGFPLLQKPDKLDHPKLVHLTLR----FLHLCRFV*RYHVLEKH 132
            SL + +L+  DK DH      T      F+H+CRFV   HVL  H
Sbjct: 1678 SLEYVILRL-DKADHVTFKQTTSTALWYFMHVCRFVTGLHVLYAH 1721


>SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +1

Query: 247 PRDKVSKHLDSFHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKGILLDKAKAXEKGVSV 426
           P D+++  LDS    LE +   + V    K+  N    D    K   +D A   E G  +
Sbjct: 108 PADQLNHLLDSREGLLEHIHTAAHVLMESKRQENIKGKDTEDKK---VDNASVDENGAPL 164

Query: 427 AKDLLRDKTEE 459
           + ++ +DKTE+
Sbjct: 165 SYNIEKDKTED 175


>SB_36251| Best HMM Match : BNR (HMM E-Value=1.7e-11)
          Length = 210

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 79  ASGSSIVLCYRGNRINNLQNGKKSRC 2
           AS S++VL  R N+I  +  GKKSRC
Sbjct: 52  ASNSNVVL--RNNKIFIVSGGKKSRC 75


>SB_28053| Best HMM Match : MMPL (HMM E-Value=0.097)
          Length = 326

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +1

Query: 352 VKVDISKSKG---ILLDKAKAXEKGVSVAK 432
           +KVD++K K    +++D+AKA E GVS  +
Sbjct: 16  LKVDVNKGKPAMKVVVDRAKAGEMGVSAGQ 45


>SB_36180| Best HMM Match : BRAP2 (HMM E-Value=5.1)
          Length = 751

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +2

Query: 47  TIAEHDTAPASDAQTGDDLHQEIAGAVLGASQEHDSAKQTDTNVKTVKLGGP----ILDD 214
           ++AEH     +DA+ GD+  ++ A AV GAS            VK  K G P    +   
Sbjct: 184 SMAEHGLGRLADAERGDEETKKAATAV-GASIAEHIKHAIAEQVKRAKPGFPRFLTLAQK 242

Query: 215 LIYQVSA 235
           L+Y V A
Sbjct: 243 LLYAVPA 249


>SB_25281| Best HMM Match : DUF497 (HMM E-Value=2)
          Length = 754

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +2

Query: 47  TIAEHDTAPASDAQTGDDLHQEIAGAVLGASQEHDSAKQTDTNVKTVKLGGP----ILDD 214
           ++AEH     +DA+ GD+  ++ A AV GAS            VK  K G P    +   
Sbjct: 210 SMAEHGLGRLADAERGDEETKKAATAV-GASIAEHIKHAIAEQVKRAKPGFPRFLTLAQK 268

Query: 215 LIYQVSA 235
           L+Y V A
Sbjct: 269 LLYAVPA 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,206,301
Number of Sequences: 59808
Number of extensions: 246464
Number of successful extensions: 621
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)