Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0594.Seq
         (488 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         28   0.20 
AY579077-1|AAT81601.1|  101|Anopheles gambiae neuropeptide F pro...    23   5.6  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   7.4  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 232 CSNGKPRDKVSKHLDSFHDTLEKVTDLSSVGNIIKQFGNT 351
           C NG+P D   KH D F+  LE V   SS G +  Q   T
Sbjct: 736 CRNGEPPDWELKHADCFNHCLE-VYRPSSGGAVALQSNGT 774


>AY579077-1|AAT81601.1|  101|Anopheles gambiae neuropeptide F
           protein.
          Length = 101

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 222 IRFLQQRETKR*SFKTPRF 278
           IR+LQ+ ETK      PRF
Sbjct: 44  IRYLQELETKHAQHARPRF 62


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 217  NLSGFCSNGKPRDKVSKHLDSFHDTLEKV 303
            NLS      K  D ++K L S  DTLEK+
Sbjct: 992  NLSDPDQIKKSGDSLAKELQSKLDTLEKI 1020


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 453,361
Number of Sequences: 2352
Number of extensions: 8516
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43131618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)