Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0594.Seq
(488 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL450998-14|CAH70862.1| 296|Homo sapiens SMART/HDAC1 associated... 31 1.6
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 31 1.6
AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein pr... 31 1.6
AL034555-6|CAI19528.1| 296|Homo sapiens SMART/HDAC1 associated ... 31 1.6
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 31 1.6
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 31 1.6
AK098232-1|BAC05264.1| 579|Homo sapiens protein ( Homo sapiens ... 30 4.9
AK095859-1|BAC04638.1| 613|Homo sapiens protein. 30 4.9
AK095218-1|BAC04502.1| 781|Homo sapiens protein ( Homo sapiens ... 30 4.9
AK057804-1|BAB71582.1| 398|Homo sapiens protein ( Homo sapiens ... 30 4.9
U72391-1|AAC51287.1| 1461|Homo sapiens neogenin protein. 29 8.6
U61262-1|AAB17263.1| 1461|Homo sapiens neogenin protein. 29 8.6
BC117161-1|AAI17162.1| 1461|Homo sapiens neogenin homolog 1 (chi... 29 8.6
AB209412-1|BAD92649.1| 1130|Homo sapiens neogenin homolog 1 vari... 29 8.6
>AL450998-14|CAH70862.1| 296|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 296
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 280 FHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKGI 384
F LEK T + NI ++FG V +DI K G+
Sbjct: 180 FIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGV 214
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 280 FHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKGI 384
F LEK T + NI ++FG V +DI K G+
Sbjct: 441 FIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGV 475
>AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein
protein.
Length = 3261
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 280 FHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKGI 384
F LEK T + NI ++FG V +DI K G+
Sbjct: 38 FIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGV 72
>AL034555-6|CAI19528.1| 296|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 296
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 280 FHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKGI 384
F LEK T + NI ++FG V +DI K G+
Sbjct: 180 FIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGV 214
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 280 FHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKGI 384
F LEK T + NI ++FG V +DI K G+
Sbjct: 441 FIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGV 475
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 280 FHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKGI 384
F LEK T + NI ++FG V +DI K G+
Sbjct: 441 FIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGV 475
>AK098232-1|BAC05264.1| 579|Homo sapiens protein ( Homo sapiens
cDNA FLJ40913 fis, clone UTERU2005446. ).
Length = 579
Score = 29.9 bits (64), Expect = 4.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 317 DDKSVTFSNVS*NESRCFETLSLGFPLLQKPDKLDHPKLVHLTL 186
D ++T S NE++CF +S+ PL+ + D+P + L++
Sbjct: 427 DFANLTLEEKSENEAKCFFQVSVFLPLVSATEASDYPAVSELSI 470
>AK095859-1|BAC04638.1| 613|Homo sapiens protein.
Length = 613
Score = 29.9 bits (64), Expect = 4.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 317 DDKSVTFSNVS*NESRCFETLSLGFPLLQKPDKLDHPKLVHLTL 186
D ++T S NE++CF +S+ PL+ + D+P + L++
Sbjct: 427 DFANLTLEEKSENEAKCFFQVSVFLPLVSATEASDYPAVSELSI 470
>AK095218-1|BAC04502.1| 781|Homo sapiens protein ( Homo sapiens
cDNA FLJ37899 fis, clone CD34C3000314. ).
Length = 781
Score = 29.9 bits (64), Expect = 4.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 317 DDKSVTFSNVS*NESRCFETLSLGFPLLQKPDKLDHPKLVHLTL 186
D ++T S NE++CF +S+ PL+ + D+P + L++
Sbjct: 595 DFANLTLEEKSENEAKCFFQVSVFLPLVSATEASDYPAVSELSI 638
>AK057804-1|BAB71582.1| 398|Homo sapiens protein ( Homo sapiens
cDNA FLJ25075 fis, clone CBL06008. ).
Length = 398
Score = 29.9 bits (64), Expect = 4.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 317 DDKSVTFSNVS*NESRCFETLSLGFPLLQKPDKLDHPKLVHLTL 186
D ++T S NE++CF +S+ PL+ + D+P + L++
Sbjct: 211 DFANLTLEEKSENEAKCFFQVSVFLPLVSATEASDYPAVSELSI 254
>U72391-1|AAC51287.1| 1461|Homo sapiens neogenin protein.
Length = 1461
Score = 29.1 bits (62), Expect = 8.6
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 62 DTAPASDAQTGDDLHQEIAGAV----LGASQEHDSAKQTDT 172
DT PAS +QT HQ+ GA L +SQE DS + T
Sbjct: 1310 DTMPASSSQTCCTDHQDPEGATSSSYLASSQEEDSGQSLPT 1350
>U61262-1|AAB17263.1| 1461|Homo sapiens neogenin protein.
Length = 1461
Score = 29.1 bits (62), Expect = 8.6
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 62 DTAPASDAQTGDDLHQEIAGAV----LGASQEHDSAKQTDT 172
DT PAS +QT HQ+ GA L +SQE DS + T
Sbjct: 1310 DTMPASSSQTCCTDHQDPEGATSSSYLASSQEEDSGQSLPT 1350
>BC117161-1|AAI17162.1| 1461|Homo sapiens neogenin homolog 1 (chicken)
protein.
Length = 1461
Score = 29.1 bits (62), Expect = 8.6
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 62 DTAPASDAQTGDDLHQEIAGAV----LGASQEHDSAKQTDT 172
DT PAS +QT HQ+ GA L +SQE DS + T
Sbjct: 1310 DTMPASSSQTCCTDHQDPEGATSSSYLASSQEEDSGQSLPT 1350
>AB209412-1|BAD92649.1| 1130|Homo sapiens neogenin homolog 1 variant
protein.
Length = 1130
Score = 29.1 bits (62), Expect = 8.6
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 62 DTAPASDAQTGDDLHQEIAGAV----LGASQEHDSAKQTDT 172
DT PAS +QT HQ+ GA L +SQE DS + T
Sbjct: 979 DTMPASSSQTCCTDHQDPEGATSSSYLASSQEEDSGQSLPT 1019
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,333,758
Number of Sequences: 237096
Number of extensions: 1138203
Number of successful extensions: 2251
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2251
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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