Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0594.Seq
         (488 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3254|AAF56082.2|  692|Drosophila melanogaster CG4677-PA...    31   0.85 
AE014134-951|AAF52276.2|  606|Drosophila melanogaster CG31646-PA...    29   4.5  

>AE014297-3254|AAF56082.2|  692|Drosophila melanogaster CG4677-PA,
           isoform A protein.
          Length = 692

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 140 EKHQ-EQLLQFLDEDRPQSARR*REQYRALLSWEPH 36
           ++HQ E +LQ L   +PQ  ++ ++Q+ A+ +W PH
Sbjct: 652 KQHQPENVLQDLQHWQPQQQQQRQQQHMAMATWRPH 687


>AE014134-951|AAF52276.2|  606|Drosophila melanogaster CG31646-PA
           protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 5   AALFTILQIVNAVPTIAEHDTAPASDAQTGDDLHQEIAGAVLGASQEHD 151
           AA+ +I+ +  A+P  A  ++    +    D +H +    ++G S+EHD
Sbjct: 48  AAVVSIICLSLALPGCAAQESDDEGELHHLDQMHHQHQDFIIGESEEHD 96


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,192,196
Number of Sequences: 53049
Number of extensions: 364637
Number of successful extensions: 972
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)