Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0594.Seq
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical ...    27   7.3  
AC084159-7|AAK39370.2|  277|Caenorhabditis elegans Hypothetical ...    27   7.3  
U00047-5|AAA50691.1|  399|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL132860-24|CAB60506.1|  767|Caenorhabditis elegans Hypothetical...    27   9.7  

>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = -1

Query: 308 SVTFSNVS*NESRCFETLSLGFPLLQKPDKLDHPKLVHLTLRFLHLCRFV*RYHVLEKHQ 129
           S  FS+      + F+ L   F + +K  K  + K+  + L+ LH+CR    Y  + K+ 
Sbjct: 224 STFFSSKILETFKSFDILIGTFSIFKKLRK--NQKMFKMFLKILHICRMFQNYQSVSKNI 281

Query: 128 EQLLQFLDE 102
            ++ + LD+
Sbjct: 282 SKIPKLLDK 290


>Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical
           protein E02H4.2 protein.
          Length = 560

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = +2

Query: 5   AALFTILQIVNAVPTIAEHDTAPASDAQTGDD--------LHQEIAGAVLGASQEHDSAK 160
           +A  ++ ++ N +  +AEHDTA A +    D+        LH E     +  S  H    
Sbjct: 423 SAAKSVTEVENTI--LAEHDTATAENFSNNDEPILLSVTNLHDETNNKSIDVSLNHPLPP 480

Query: 161 QTDTNVKTVKL 193
            T+T V + K+
Sbjct: 481 STETGVVSGKV 491


>Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical
           protein T13H5.2 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 57  STILLPLATRRLGTIFIKKLQELFLVLLKNMIALNKPT 170
           S + + LA  ++ T  + +LQE+F  +++ +  +N PT
Sbjct: 180 SMVQIDLAALKVVTTMLSQLQEMFPDVIRKIFIVNTPT 217


>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical
           protein DH11.3 protein.
          Length = 1270

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -3

Query: 369 RNIYFNSISKLFNYIP-HR 316
           + I F+ ISKLFNY+P HR
Sbjct: 691 QKISFSGISKLFNYLPKHR 709


>AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical
           protein Y75B12B.6 protein.
          Length = 896

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 115 NFLMKIVPSLRVASGSSIVLCYRGNRINNLQNGKKSR 5
           N    IVP +  A  +++  C R N I+ +QN  KS+
Sbjct: 552 NATKDIVPCIVSADENTVYNCLRANSIDKVQNLNKSK 588


>AC084159-7|AAK39370.2|  277|Caenorhabditis elegans Hypothetical
           protein Y73B3A.16 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 251 LGFPLLQKPDKLDHPKLVHLTLRFLHLCRF 162
           +G  LL+  +KL+  K+VHL L+  ++C F
Sbjct: 70  MGKQLLEAMEKLESVKIVHLDLKPENICFF 99


>U00047-5|AAA50691.1|  399|Caenorhabditis elegans Hypothetical
           protein ZK418.7 protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 175 ICVGLFSAIMFLRSTKNSSCNFLMKIVPSLRVASGSSIVLCY 50
           IC+GL+ A +F   +   SC+F  K    L +     + LCY
Sbjct: 211 ICIGLWGATLFYPESAPISCSF-EKCQQPLAIIIVVGLSLCY 251


>AL132860-24|CAB60506.1|  767|Caenorhabditis elegans Hypothetical
           protein Y56A3A.30 protein.
          Length = 767

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 44  PTIAEHDTAPASDAQTGDDLHQEIAGAVLGASQ--EHDSAK 160
           P++ E     A DA  GDD  +   GAV    Q  EH +++
Sbjct: 277 PSVTEGSNDIADDAGAGDDFSESTTGAVQPEQQASEHSNSE 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,179,909
Number of Sequences: 27780
Number of extensions: 197905
Number of successful extensions: 591
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)