Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0594.Seq
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          26   0.25 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      26   0.25 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +1

Query: 259 VSKHLDSFHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKGIL 387
           + K++   HD   +++    +G ++  +GN VK+   +   +L
Sbjct: 319 MQKYVQMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGLNVL 361


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +1

Query: 259 VSKHLDSFHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKGIL 387
           + K++   HD   +++    +G ++  +GN VK+   +   +L
Sbjct: 319 MQKYVQMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGLNVL 361


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 47  TIAEHDTAPASDAQTGDDLHQEIAGAVLGASQEHDSAKQTDTN 175
           TI    T+PA+ +         +A A +  +Q+H+S   T ++
Sbjct: 26  TIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSS 68



 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 99 SSPVCASLAGAVSCSAIVGTAL 34
          +SP  ASL  ++S +A+   A+
Sbjct: 32 TSPATASLESSLSAAAVAAAAV 53


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 155 RYHVLEKHQEQLLQFLDEDRPQSARR*REQ 66
           RY  L   +E+LL+     +  S  R REQ
Sbjct: 17  RYEKLHNEKEKLLEERTNRKRNSRSREREQ 46


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 155 RYHVLEKHQEQLLQFLDEDRPQSARR*REQ 66
           RY  L   +E+LL+     +  S  R REQ
Sbjct: 17  RYEKLHNEKEKLLEERTNRKRNSRSREREQ 46


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 322 GNIIKQFGNTVKVDISKSK 378
           GN I+  GN  K+  SK K
Sbjct: 580 GNFIESLGNYYKIRDSKVK 598


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 155 RYHVLEKHQEQLLQFLDEDRPQSARR*REQ 66
           RY  L   +E+LL+     +  S  R REQ
Sbjct: 251 RYEKLHNEKEKLLEERTSRKRYSCSREREQ 280


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 291 CIMKRIEVF*NFISWF 244
           C++K  E+F +   WF
Sbjct: 485 CVLKNTEIFKDKSDWF 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,051
Number of Sequences: 438
Number of extensions: 2384
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)