Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0594.Seq
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38220.1 68415.m04694 expressed protein                             29   2.2  
At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa...    28   2.9  
At4g01260.1 68417.m00166 hypothetical protein low similarity to ...    28   3.9  
At3g02930.1 68416.m00288 expressed protein  ; expression support...    28   3.9  
At3g21430.1 68416.m02704 expressed protein                             27   5.1  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    27   5.1  
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co...    27   6.8  
At3g60850.1 68416.m06807 expressed protein                             27   9.0  

>At2g38220.1 68415.m04694 expressed protein
          Length = 257

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 310 LSSVGNIIKQFGNTVKVDISKSKGILLDKAKAXEKGVSVAKDL 438
           LS   N  K     +++DISKSKG  L  A    K + V  D+
Sbjct: 122 LSVSQNSYKAGSGMIQLDISKSKGYYLTVANLKRKDIEVELDI 164


>At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 872

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 325 NIIKQFGNTVKVDISKSKGILLDKAKAXEKGVSVAKDL 438
           N+I+  G  +++DISKSKG  L  A    K V V  D+
Sbjct: 657 NLIQGSG-MIQLDISKSKGYYLTVANLKRKDVEVELDI 693


>At4g01260.1 68417.m00166 hypothetical protein low similarity to
           storekeeper protein [Solanum tuberosum] GI:14268476;
           contains Pfam profile PF04504: Protein of unknown
           function, DUF573
          Length = 325

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = +1

Query: 220 LSGFCSNGKPRDKVSKHLDSFHDTLEK-----VTD---LSSVGNIIKQFGNTVKVDISKS 375
           L GF      ++  S H+D F+++++      VT    ++ +GN+ K+F   V   + K 
Sbjct: 120 LQGFLDFATKKENPSDHIDDFYESIKNSISFDVTKPQLVTKIGNLKKKFNGRVSKGLKKG 179

Query: 376 K 378
           K
Sbjct: 180 K 180


>At3g02930.1 68416.m00288 expressed protein  ; expression supported
           by MPSS
          Length = 806

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 283 HDTLEKVTDLSSVGNIIKQFGNTVKVDISKSK---GILLDKAKAXEKGVSVAKDLLRDKT 453
           HD   ++TDL     +++    + KVD+ KS+   GI  +++   EK     K+ L    
Sbjct: 351 HDMESEITDLKEKIELLEMTVASQKVDLEKSEQKLGIAEEESSKSEKEAEKLKNELETVN 410

Query: 454 EE 459
           EE
Sbjct: 411 EE 412


>At3g21430.1 68416.m02704 expressed protein 
          Length = 961

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 89  TGDDLHQEIAGAVLGASQEHDSAKQTDTNVKTVKLGGP 202
           T DD+  EIA A+  ASQ   S K + T  +  K+  P
Sbjct: 41  TDDDMEHEIALALAEASQRGGSTKNSHTPNRKAKMYPP 78


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 280 FHDTLEKVTDLSSVGNIIKQFGNTVKVDISKSKGILLDKAKAXEKGVSVAKDLLRDKTE 456
           FH  L  V        ++    N +K  + + +  LLDK K+ E  +S A D   D  +
Sbjct: 377 FHYNLGNVPSTPFSTEVVLNLTNRIKSRLGELEMDLLDKKKSNETALSTAWDCYMDAND 435


>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
           non-consensus acceptor splice site AT at exon 2; similar
           to DEAD box helicase protein GB:NP_006764 from [Homo
           sapiens], contains Pfam profile: PF00270  DEAD/DEAH box
           helicase
          Length = 568

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 85  RVASGSSIVLCYRGNRINNLQNGK 14
           R+ASGS++V+   G  +++LQN K
Sbjct: 207 RIASGSNLVIATPGRLLDHLQNTK 230


>At3g60850.1 68416.m06807 expressed protein 
          Length = 648

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 203 ILDDLIYQVSAATGNQEIKFQNTSIRFMIH 292
           I D L  ++  ATGN+ + F+N S +F+ H
Sbjct: 165 IQDKLTSRLDPATGNEFLCFKNNSQQFVSH 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,487,277
Number of Sequences: 28952
Number of extensions: 178947
Number of successful extensions: 523
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)