Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0593.Seq
         (279 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                25   7.1  
SB_23143| Best HMM Match : Keratin_B2 (HMM E-Value=0.025)              25   7.1  

>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 16  YYLGNTITFFFFPVQNRGF 72
           YY  N   F FF V +RG+
Sbjct: 344 YYKNNAFCFIFFKVSDRGY 362


>SB_23143| Best HMM Match : Keratin_B2 (HMM E-Value=0.025)
          Length = 348

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 28  NTITFFFFPVQNRGFXCMLIKVKQRESYR 114
           N IT  FFP  +R +    ++   R SYR
Sbjct: 163 NAITPVFFPSPSRSYRVSCVQPSPRRSYR 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,290,642
Number of Sequences: 59808
Number of extensions: 74983
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)