Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0591.Seq
         (489 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22X64 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_A6TQE6 Cluster: Putative uncharacterized protein precur...    32   7.9  

>UniRef50_Q22X64 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1044

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 260 CVYLR*YNIIVTIKSEHFYHLSTRLNFESNS*M*DNKFIYFFCKETN 120
           C  L  Y   +  K +HF  LS  LN++ +    D+ F+Y FC   N
Sbjct: 686 CQLLLGYKTFIQKKEKHFMILSGLLNYKIDPEAEDDHFLYVFCMSCN 732


>UniRef50_A6TQE6 Cluster: Putative uncharacterized protein
           precursor; n=1; Alkaliphilus metalliredigens QYMF|Rep:
           Putative uncharacterized protein precursor -
           Alkaliphilus metalliredigens QYMF
          Length = 210

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +1

Query: 295 KHSLIVLTIEFYLFIYLLSCTNKVIINTKH*QIDK 399
           K  +++ TI   LFI+L+ CTN+  ++ K+ ++++
Sbjct: 2   KKKILLFTIVISLFIFLIGCTNQATVDEKNLKVEE 36


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,574,065
Number of Sequences: 1657284
Number of extensions: 6944936
Number of successful extensions: 14092
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14088
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)