Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0591.Seq
         (489 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.9  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   7.9  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   7.9  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   7.9  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 271 LLYVCICSKHSLIVLTIEFYLFIYLLS 351
           L+ + + + H + ++   FY+  YL+S
Sbjct: 235 LILLLMFTSHFIFIVVSIFYMSAYLIS 261


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 413 ICHELLSICQCFVLMITL 360
           IC+ ++S   CF++++ L
Sbjct: 160 ICNTVISATVCFMMLLML 177


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 81  TYLTVPCLLSTTWISLFTKEIN 146
           TYL+V C ++  W  +   E N
Sbjct: 141 TYLSVTCYVTYAWSPIDHTESN 162


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 413 ICHELLSICQCFVLMITL 360
           IC+ ++S   CF++++ L
Sbjct: 156 ICNTVISATVCFMMLLML 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,043
Number of Sequences: 336
Number of extensions: 2271
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)