Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0591.Seq
         (489 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF492764-2|AAM11674.1|  849|Drosophila melanogaster pol protein ...    29   3.4  

>AF492764-2|AAM11674.1|  849|Drosophila melanogaster pol protein
           protein.
          Length = 849

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 22  NSYLPILSEFNIQKSEDNN*PTLQCLVYCRQHGLVSLQKK*INLLSHIYEFDSKLRRVDR 201
           N+Y PI  EF I K  D+    +   +  +   ++  QKK   L + +Y+     +  D+
Sbjct: 36  NNYFPIAQEFLIHKFSDHYDMLIGRKLLSKAKAIIDYQKKTATLFNKVYKIKDTEKLTDQ 95


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,053,403
Number of Sequences: 53049
Number of extensions: 322239
Number of successful extensions: 552
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)