Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0590.Seq
         (486 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   1.5  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   1.9  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    22   2.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   4.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   5.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   5.9  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 402 TVPRVVMKMYRPPAVPVTLIQIQA 473
           T+PR  +     P V VT I++QA
Sbjct: 416 TLPRYTVAQLNYPGVTVTNIEVQA 439


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/47 (17%), Positives = 24/47 (51%)
 Frame = -1

Query: 162 CYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYYRQMFWIL 22
           CY   +W  +     + +W+ R+ + F  + C +++ C++  +  ++
Sbjct: 116 CYAVYYWRQQY----EDFWH-RYTLSFIENYCQFLYNCFHSTLLLMI 157


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 165 YCYRQMFWILRCLSLNQCY 109
           YC R+ F   R ++L  CY
Sbjct: 82  YCCRESFLRERTITLTHCY 100


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 413 SWNCLHESCYRR-ISWILRCLNSNQCYWNC 327
           +W C+++ C RR I   +  ++ + C   C
Sbjct: 57  TWQCINQRCERRHIKGAIPVVSLSTCSMLC 86


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 432 RPPAVPVTLIQIQAA 476
           +PP +PVT I ++ A
Sbjct: 127 KPPTLPVTSIHLRGA 141


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 4/16 (25%), Positives = 12/16 (75%)
 Frame = -1

Query: 210 WMIHFHHDCWNCIHKY 163
           +M+H ++  W C++++
Sbjct: 152 FMLHCNNTTWRCLYRW 167


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,605
Number of Sequences: 336
Number of extensions: 2203
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)