Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0590.Seq
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   1.5  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   4.6  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   6.1  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 430 YIFITTLGTVFMRAATVGFPGSYAV*IRISVTGTAGG*YTFITTVGTVS 284
           YI  TT+ T  +   T G+ G+    + +  TGT G     I T  TV+
Sbjct: 787 YIIPTTIVTGTVTTVTTGYTGTETSTVTVIPTGTTGTTTVVIQTPTTVT 835


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 112 TLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYHPPAVPVT 228
           T+  +Q+  +  HLA+A  +      V+ VY P A+  T
Sbjct: 149 TVFASQSNVEAAHLALASTLAAKAAPVIHVYEPDAIVTT 187


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 189 DCWNCIHKYCYRQMFWILRCLSLNQCYWN 103
           DC  C+H YC + +  +  C++ N  + N
Sbjct: 198 DCGYCLHVYCCKHLAHV-NCINCNTPWAN 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,535,779
Number of Sequences: 5004
Number of extensions: 30961
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)