Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0590.Seq
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0198 - 21158350-21159528                                         31   0.65 
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69...    30   1.1  
01_06_0839 + 32340226-32340360,32340482-32340832,32341933-323420...    30   1.1  
07_03_1046 - 23531218-23532638,23532781-23532868                       29   1.5  
07_01_0313 + 2216498-2216953                                           28   4.6  
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64...    28   4.6  
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    27   8.0  

>11_06_0198 - 21158350-21159528
          Length = 392

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
 Frame = -2

Query: 446 NCRWSIHFHHDSWN---CLHESCYRRISWILRCLNSN---QCYWNCRWMIHFHHDCWN-- 291
           +CR       D W    CL +  +RR        N +    CY  CR     HHD W   
Sbjct: 128 DCREQCEHQQDWWEKQRCLMDCRHRRQEVDADDDNHHGRDPCYKQCR----HHHDQWKKQ 183

Query: 290 -CIHKCCYHQMYWSCAV 243
            C+ +C YHQ     AV
Sbjct: 184 QCMEECRYHQRQQDAAV 200


>03_01_0085 +
           690618-691012,691114-691193,691775-691959,692363-693320,
           693391-693518,693951-694010,694113-694163,694704-694821,
           694990-695915,695916-697707,697810-697943,698029-698526
          Length = 1774

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 335 WNCRWMIHFHHDCWNCIHKCCYHQMYWSCAV 243
           WNC W  H    C   +H  CY   Y  C V
Sbjct: 156 WNCGW--HICSSCEKAVHYMCYTCTYSLCKV 184


>01_06_0839 +
           32340226-32340360,32340482-32340832,32341933-32342013,
           32342368-32343150
          Length = 449

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 73  VVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYHPPAVPVTL 231
           V+  V    A+P  + Q Q  +  E ++ +VL   V     EV HPP V  TL
Sbjct: 397 VLARVEGGQAIPERIAQVQPFEADEAMSESVLTGNVSMSKTEVVHPPPVYFTL 449


>07_03_1046 - 23531218-23532638,23532781-23532868
          Length = 502

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 439 GGRYIFITTLGTVFMRAATVGFPGSYA-V*IRISVTGTAGG*YTFITTVGTVSISAATTR 263
           G R+  +      F RA  +GF G YA + +   V G   G    I  V T  IS A++R
Sbjct: 78  GRRFTVVFAAAFFFARALLMGFSGDYATLMVGRFVAGVGVGYAIMIAPVYTAEISPASSR 137


>07_01_0313 + 2216498-2216953
          Length = 151

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = +3

Query: 249 AGPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA*DPGNPTVAAL----MKTVPRV 416
           A  +  V A    T+PT+V  V  PP   V  + +     P  PTV A+    M  VP V
Sbjct: 40  AAAIPAVPAMPKPTIPTIVPAVTLPPIPAVPKVTLPPM--PAIPTVPAVTMPPMPAVPAV 97

Query: 417 VMKMYRP-PAVP 449
                 P PAVP
Sbjct: 98  PAVTLPPMPAVP 109


>06_01_0081 +
           646100-646346,646432-646848,647067-647170,648152-648352,
           649088-649798,649944-650674,650942-651017,651096-651182,
           651429-651517,651917-651973,652402-652510,652590-652649,
           652835-652919,653178-653242,653694-653753,653869-653913,
           654697-654800,654877-655099
          Length = 1156

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 126 SLNQCYW-NCRWMIHFHHDCCNYIHKCY 46
           S N CY  N +W++ F+   CN++ K Y
Sbjct: 231 SKNICYQRNIKWLMFFYLLLCNFLFKAY 258


>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -1

Query: 201 HFHHDCWNC--IHKYCYRQMFWILRCL 127
           HF+ +CWNC      CY    W L+ L
Sbjct: 769 HFYCECWNCSLYPLLCYLGPTWFLQYL 795


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,653,738
Number of Sequences: 37544
Number of extensions: 223477
Number of successful extensions: 555
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)