Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0590.Seq
(486 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 34 0.054
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) 34 0.071
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 32 0.22
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 32 0.29
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 31 0.50
SB_40824| Best HMM Match : His_leader (HMM E-Value=3.1) 29 2.7
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_38399| Best HMM Match : DUF81 (HMM E-Value=3.6) 27 8.2
SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29) 27 8.2
SB_33344| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 34.3 bits (75), Expect = 0.054
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 195 HHDCWNCIHKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYYR 40
HH C C H+YCY + C + ++ C H++H C + H C YR
Sbjct: 20 HHYCCYCHHRYCYYRHHHY--CWYRHHYHYPC--YRHYYHRCYRH-HYCCYR 66
Score = 32.3 bits (70), Expect = 0.22
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = -2
Query: 398 HESCYRRISWILRCLNSNQCYWN----CRWMIHFHHDCWNCIHKCCYHQMY 258
H CYR + C + CY+ C + H+H+ C+ + CY Y
Sbjct: 13 HNRCYRHHHYCCYC-HHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYRHHY 62
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -1
Query: 120 NQCYWNCRWMIHFHHDCCNYIHK--CYYRQMF 31
N+CY + + + HH C Y H C+YR +
Sbjct: 14 NRCYRHHHYCCYCHHRYCYYRHHHYCWYRHHY 45
>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
Length = 165
Score = 33.9 bits (74), Expect = 0.071
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -1
Query: 201 HFHHDCWNCIHKYCYRQMFWILR--CLSLNQCYWNCRWMIHFHHDCCNYIHKCYYRQMFW 28
H + C +Y Y + F ++ C CY C + ++H C Y +C +R ++
Sbjct: 28 HLYRSCHRVCRRYRYCKSFLFIKHKCHYKYHCYLKCSCKVKYYH--CRYRRRCVWRYKYY 85
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 32.3 bits (70), Expect = 0.22
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 264 LVVAALMDTVPTVVMKVYHPPAV---PVTLIRIQTA*DPGNPTVAALMKTVPRVVMKMYR 434
L V +DT+P VV ++ P V P TL R+ T D P V + T+PRVV ++
Sbjct: 168 LRVGTRLDTLPRVVTRLDTLPRVVTRPDTLPRVVTCLDT-LPRVGTRLDTLPRVVTRLDT 226
Query: 435 PPAVPVTL 458
P V L
Sbjct: 227 LPRVVTRL 234
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPP 440
V +DT+P VV ++ P V TL RI T D P V + T+PRVV ++ P
Sbjct: 338 VGTRLDTLPRVVTRLDTLPRVVTRLDTLPRIVTRLDT-LPRVGTRLDTLPRVVTRLDTLP 396
Query: 441 AVPVTL 458
V L
Sbjct: 397 RVVTRL 402
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPP 440
V +DT+P VV ++ P V TL R+ T D P V + T+PRVV ++ P
Sbjct: 378 VGTRLDTLPRVVTRLDTLPRVVTRLDTLPRVGTRLDT-LPRVVTRLDTLPRVVTRLDTLP 436
Query: 441 AVPVTL 458
V L
Sbjct: 437 RVVTRL 442
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPP 440
V +DT+P VV ++ P V TL R+ T D P V + T+PRVV ++ P
Sbjct: 388 VVTRLDTLPRVVTRLDTLPRVGTRLDTLPRVVTRLDT-LPRVVTRLDTLPRVVTRLDTLP 446
Query: 441 AVPVTL 458
V L
Sbjct: 447 RVVTRL 452
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPP 440
V +DT+P VV ++ P V TL R+ T D P V + T+PRVV ++ P
Sbjct: 478 VVTRLDTLPRVVTRLDTLPRVVTRLDTLPRVVTRLDT-LPRVGTRLDTLPRVVTRLDTLP 536
Query: 441 AVPVTL 458
V L
Sbjct: 537 RVVTRL 542
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPP 440
V +DT+P VV ++ P V TL R+ T D P V + T+PRVV ++ P
Sbjct: 488 VVTRLDTLPRVVTRLDTLPRVVTRLDTLPRVGTRLDT-LPRVVTRLDTLPRVVTRLDTLP 546
Query: 441 AVPVTL 458
V L
Sbjct: 547 RVVTRL 552
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPP 440
V +DT+P VV ++ P V TL R+ T D P V + T+PRVV ++ P
Sbjct: 498 VVTRLDTLPRVVTRLDTLPRVGTRLDTLPRVVTRLDT-LPRVVTRLDTLPRVVTRLDTLP 556
Query: 441 AVPVTL 458
V L
Sbjct: 557 RVVTRL 562
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPP 440
V +DT+P VV ++ P V TL R+ T D P V + T+PRVV ++ P
Sbjct: 518 VGTRLDTLPRVVTRLDTLPRVVTRLDTLPRVVTRLDT-LPRVVTRLDTLPRVVTRLDTLP 576
Query: 441 AVPVTL 458
V L
Sbjct: 577 RVGTRL 582
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPP 440
V +DT+P VV ++ P V TL R+ T D P V + T+PRVV ++ P
Sbjct: 538 VVTRLDTLPRVVTRLDTLPRVVTRLDTLPRVVTRLDT-LPRVGTRLDTLPRVVTRLDTLP 596
Query: 441 AVPVTL 458
V L
Sbjct: 597 RVVTRL 602
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPP 440
V +DT+P VV ++ P V TL R+ T D P V + T+PRVV ++ P
Sbjct: 548 VVTRLDTLPRVVTRLDTLPRVVTRLDTLPRVGTRLDT-LPRVVTRLDTLPRVVTRLDTLP 606
Query: 441 AVPVTL 458
V L
Sbjct: 607 RVGTRL 612
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPP 440
V +DT+P VV ++ P + TL R+ T D P V + T+PRVV ++ P
Sbjct: 348 VVTRLDTLPRVVTRLDTLPRIVTRLDTLPRVGTRLDT-LPRVVTRLDTLPRVVTRLDTLP 406
Query: 441 AVPVTL 458
V L
Sbjct: 407 RVGTRL 412
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPP 440
V +DT+P VV + P V TL R+ T D P V + T+PRVV ++ P
Sbjct: 180 VVTRLDTLPRVVTRPDTLPRVVTCLDTLPRVGTRLDT-LPRVVTRLDTLPRVVTRLDTLP 238
Query: 441 AVPVTL 458
V L
Sbjct: 239 RVVTRL 244
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 270 VAALMDTVPTVVMKVYHPPAVPVTLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPPAVP 449
V +DT+P VV ++ P V L + P V + T+PRVV ++ P V
Sbjct: 240 VVTRLDTLPRVVTRLDTLPRVVTRLDTLPRTRLDTLPRVVTRLDTLPRVVTRLDTLPRVV 299
Query: 450 VTL 458
L
Sbjct: 300 TCL 302
Score = 27.1 bits (57), Expect = 8.2
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 264 LVVAALMDTVPTVVMKVYHPPAVPV---TLIRIQTA*DPGNPTVAALMKTVPRVVMKMYR 434
L V +DT+P V ++ P V TL R+ T D P V + T+PRVV ++
Sbjct: 78 LRVVTRLDTLPRVFTRLDTLPRVCTRLDTLPRVVTRLDT-LPRVVTRLDTLPRVVTRLDT 136
Query: 435 PPAVPVTL 458
P V L
Sbjct: 137 LPRVVTRL 144
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 31.9 bits (69), Expect = 0.29
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -2
Query: 485 WIL-RCLNLNQCYWNCRWSIHFHHDSWNCLHESCYRRISWILRCLNSNQCYWNCRWMIHF 309
W L R +++ C CRW + D C +C R+ R + + C CRW I+
Sbjct: 117 WRLDRQADIHTCKSTCRWRLDRQADIHTC-KSTCRWRLD---RQADIHTCKSTCRWRINR 172
Query: 308 HHDCWNCIHKC 276
D C C
Sbjct: 173 QADIHRCKSTC 183
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = -1
Query: 237 LNQCYWNCRWMIHFHHDCWNCIHKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYI 58
++ C CRW + D C +R I R +++C CRW + D Y+
Sbjct: 142 IHTCKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCKSTCRWQLDRQADIHTYM 197
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 31.1 bits (67), Expect = 0.50
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 165 YCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYY 43
YCY ++ C CY+ C ++ CC Y + CYY
Sbjct: 471 YCYCYCYYYCYCYCYYYCYYYCYCYCYY---CCYYCY-CYY 507
Score = 31.1 bits (67), Expect = 0.50
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1
Query: 186 CWNCIHKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNY 61
C+ + YCY ++ C CY+ + + H+ CC Y
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYCCYY 517
>SB_40824| Best HMM Match : His_leader (HMM E-Value=3.1)
Length = 456
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/84 (17%), Positives = 34/84 (40%)
Frame = +1
Query: 10 TQTAQDPEHLAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTV 189
++ +Q H ++ I T YH + + +I T H ++++ +T
Sbjct: 193 SELSQQYYHQHHYNIITITGTSSQHQYHHRNIIIIIITTSLPSQKHHRDISIITETSLAS 252
Query: 190 VMEVYHPPAVPVTLIQTQTAQDQY 261
+ YH ++ T + +Q Q+
Sbjct: 253 LQHHYHHRSITTTSVSSQKHHHQH 276
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 359 CLNSNQCYWNCRWMIHFHHDCWNCIHKCC 273
C +N C +NC H+ + +C HKCC
Sbjct: 317 CAFANHCDFNC---THYINGSSDCNHKCC 342
>SB_38399| Best HMM Match : DUF81 (HMM E-Value=3.6)
Length = 388
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +1
Query: 4 IQTQTAQDPEHLAVVALMDIVTTVVMEV-YHPPAVPVTLIQTQTAKDPEHLAVAVLMDTV 180
I T + P H+ + ++ I+ T + YH + V ++ ++ D + VA+++
Sbjct: 277 IITSSFDYPYHMVPIIIITIIITSSSDYPYHMMQIIVIIVIITSSSDYTYHMVAIIIIIT 336
Query: 181 PTVVMEVYHPPAVPVTLIQTQTAQDQY 261
+ Y VP+ +I T ++ Y
Sbjct: 337 IIITSSDYPYHMVPIIVIITLSSDYPY 363
>SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)
Length = 1167
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 94 PPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYHPPAVPVTLIQTQTAQDQYI 264
P VP ++ +++ + L V ++T P V E PP +P+ T Q Y+
Sbjct: 1107 PEVVPPP-VEMESSTTSQSLETPVQVET-PNAVAEEQTPPIIPIRRSSRTTTQPSYL 1161
>SB_33344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -2
Query: 473 CLNL---NQCYWNCRWSIHFHHDSWNCLHESCYRRISWILRCLNSNQCY 336
CL+L NQCY + D L CY ++ + +C NQCY
Sbjct: 20 CLDLALDNQCYLELALDNQCYLDL--ALVSQCYLDLALVSQCYLDNQCY 66
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 461 NQCYWNCRWSIHFHHDSWNCLHESCYRRISWILRCLNSNQCY 336
NQCY + + D L CY ++ + +C NQCY
Sbjct: 256 NQCYLDLALDDQCYLDL--ALDNQCYLDLALVSQCYLDNQCY 295
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,836,392
Number of Sequences: 59808
Number of extensions: 265075
Number of successful extensions: 984
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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