Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0590.Seq
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    31   0.44 
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    30   0.77 
U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like pr...    30   1.0  
AF025468-2|AAF02174.2|  342|Caenorhabditis elegans Serpentine re...    29   1.8  
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    27   7.2  

>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -1

Query: 174 IHKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYYRQMF--WILRCLSL 7
           I +YC+    WI +  S + C    + +  F H C  +IHKC YR+    ++  CL++
Sbjct: 539 IDRYCFT--CWIPKTSSSHHCSQCDKCVDGFDHHC-PWIHKCVYRKNLRAFVFFCLTI 593


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 21/81 (25%), Positives = 33/81 (40%)
 Frame = +1

Query: 16  TAQDPEHLAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVM 195
           T    +   V A+ +  TTV+ EV      P T  ++ T K     A A   +  PT   
Sbjct: 225 TLASEDETTVTAIAESTTTVIAEVSTTTEEPTTTAESTTKKSTTK-APATTEEPTPTTTE 283

Query: 196 EVYHPPAVPVTLIQTQTAQDQ 258
           EV    A   T   ++T+ ++
Sbjct: 284 EVTTTEAETSTTTSSETSTEK 304


>U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like
           protein family protein11 protein.
          Length = 394

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 28  PEHLAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKD-PEHLAVAVLMDTVPTVVMEVY 204
           P+ L  + + +I+   +  V  P  +P+TL   +  +  P  L    + DT+P  +    
Sbjct: 183 PKILPTIKIPEIIPLTLPTVKIPDIIPITLPTIKIPEIVPTKLPTVEVPDTIPKTLPTTK 242

Query: 205 HPPAVPVT 228
            P  VP+T
Sbjct: 243 IPDIVPIT 250


>AF025468-2|AAF02174.2|  342|Caenorhabditis elegans Serpentine
           receptor, class h protein308 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/66 (24%), Positives = 36/66 (54%)
 Frame = +1

Query: 37  LAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYHPPA 216
           +A++A ++I+  V+  VY+   VP   +  +T ++     VAV++ T   +++ +    A
Sbjct: 218 MALIATVNILIHVICLVYYLYVVPPRTLSKETRQNQRVFLVAVVLQTSVPLMLIIVPGMA 277

Query: 217 VPVTLI 234
           V + L+
Sbjct: 278 VVLPLL 283


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = +3

Query: 288 TVPTVVMKVYHPPAVPVTLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPPAVPVT 455
           T PT    +   P  P T   +++   P  PT    MK+ P     M   P  P T
Sbjct: 248 TTPTTPTTMKSTPTTPTTPTTMKST--PTTPTTPTTMKSTPTTPTTMKSTPTTPTT 301



 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = +3

Query: 288 TVPTVVMKVYHPPAVPVTLIRIQTA*DPGNPTVAALMKTVPRVVMKMYRPPAVPVT 455
           T PT    +   P  P T   +++   P  PT    MK+ P     M   P  P T
Sbjct: 362 TTPTTPTTMKSTPTTPTTPTTMKST--PTTPTTPTTMKSTPTTPTTMKSTPTTPTT 415


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 255 PVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA*DPGNPTVAALMKTVPRVVM 422
           PV +V  A  +      +    PP  PV +    T+ +P N TVA +M   P VV+
Sbjct: 416 PVVIVDPATSEEPNDTTVAPVMPPNPPVVISGPATSEEPNNTTVAQVMPPNPPVVI 471



 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 255 PVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA*DPGNPTVAALMKTVPRVVM 422
           PV +V  A  +      +    PP  PV ++   T+ +P + TVA +M   P VV+
Sbjct: 468 PVVIVDPATSEEPNDTTVAQVMPPNPPVVIVDPATSEEPNDTTVAQVMPPNPPVVI 523



 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 297 TVVMKVYHPPAVPVTLIRIQTA*DPGNPTVAALMKTVPRVVM 422
           T V +V  PP  PV ++   T+ +P + TVA +M   P VV+
Sbjct: 405 TTVAQVM-PPNPPVVIVDPATSEEPNDTTVAPVMPPNPPVVI 445



 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 297 TVVMKVYHPPAVPVTLIRIQTA*DPGNPTVAALMKTVPRVVM 422
           T V +V  PP  PV ++   T+ +P + TVA +M   P VV+
Sbjct: 457 TTVAQVM-PPNPPVVIVDPATSEEPNDTTVAQVMPPNPPVVI 497



 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 321 PPAVPVTLIRIQTA*DPGNPTVAALMKTVPRVVM 422
           PP  PV +    T+ +P N TVA +M   P VV+
Sbjct: 386 PPNPPVVISGPATSEEPNNTTVAQVMPPNPPVVI 419



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 70  TVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVM 195
           T V +V  PP  PV +    TAKDP       ++ T P VV+
Sbjct: 509 TTVAQVM-PPNPPVVISGPATAKDPSTTTSDPVVQTNPPVVI 549


>Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical
           protein K06B4.1 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 180 NCI--HKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCY 46
           NC+  H+    Q + +L C +    +   R ++   H CC   +KCY
Sbjct: 4   NCLICHRKAAGQHYGVLSCFACKMFFH--RMVVENLHYCCQKFNKCY 48


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = +1

Query: 1   PIQTQTAQDPEHLAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTV 180
           P+ TQT+ + +  A    + +  T++  +   PA+  T  Q Q    P   AV V     
Sbjct: 772 PLSTQTSAEIQQSAQQPSVPV--TMIANI---PAMSPTSAQPQPVLSPTSAAVPV----- 821

Query: 181 PTVVMEVYHPPAVPVTLIQTQTA 249
           PT ++ V  P  +PV  + T  A
Sbjct: 822 PTTMIHVPKPSEIPVQNVATTAA 844


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = +1

Query: 1   PIQTQTAQDPEHLAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTV 180
           P+ TQT+ + +  A    + +  T++  +   PA+  T  Q Q    P   AV V     
Sbjct: 772 PLSTQTSAEIQQSAQQPSVPV--TMIANI---PAMSPTSAQPQPVLSPTSAAVPV----- 821

Query: 181 PTVVMEVYHPPAVPVTLIQTQTA 249
           PT ++ V  P  +PV  + T  A
Sbjct: 822 PTTMIHVPKPSEIPVQNVATTAA 844


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 341 CYWNCRWMIHFHHDCWNC 288
           C+W CR  +  HH C NC
Sbjct: 62  CFW-CRCFMDVHHRCPNC 78



 Score = 27.1 bits (57), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 228 CYWNCRWMIHFHHDCWNC 175
           C+W CR  +  HH C NC
Sbjct: 62  CFW-CRCFMDVHHRCPNC 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,872,413
Number of Sequences: 27780
Number of extensions: 195875
Number of successful extensions: 561
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)