Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0590.Seq
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    29   0.035
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    29   0.035
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   9.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   9.2  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 0.035
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 186 CWNCIHKYCYRQMFWILRCLS-LNQCYWNCRWMIHFHHDCCNYIHKCYYRQMFWILR 19
           C NCIH   +  +FW+  C S +N C +   +   F     + I KC+ ++    LR
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRRTNTLR 90



 Score = 22.6 bits (46), Expect = 2.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 299 CWNCIHKCCYHQMYW 255
           C NCIH   +  ++W
Sbjct: 35  CRNCIHPTVFSVLFW 49



 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 72 CCNYIHKCYYRQMFWILRCLS 10
          C N IH   +  +FW+  C S
Sbjct: 35 CRNCIHPTVFSVLFWLGYCNS 55


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 0.035
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 186 CWNCIHKYCYRQMFWILRCLS-LNQCYWNCRWMIHFHHDCCNYIHKCYYRQMFWILR 19
           C NCIH   +  +FW+  C S +N C +   +   F     + I KC+ ++    LR
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRRTNTLR 538



 Score = 22.6 bits (46), Expect = 2.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 299 CWNCIHKCCYHQMYW 255
           C NCIH   +  ++W
Sbjct: 483 CRNCIHPTVFSVLFW 497



 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 72  CCNYIHKCYYRQMFWILRCLS 10
           C N IH   +  +FW+  C S
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNS 503


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = -1

Query: 216 CRWMIHFHHDCWNCIHKYCYRQMFWILRCLSLNQCYWN 103
           CR+  H    C  C    C  +M     C   N   WN
Sbjct: 737 CRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWN 774


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 165 YCYRQMFWILRCLSLNQCY 109
           YC R+ +   R ++L+ CY
Sbjct: 92  YCCRESYLKERHITLHHCY 110


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 165 YCYRQMFWILRCLSLNQCY 109
           YC R+ +   R ++L+ CY
Sbjct: 92  YCCRESYLKERHITLHHCY 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,395
Number of Sequences: 438
Number of extensions: 2098
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)