Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0590.Seq
         (486 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    31   0.41 
At1g69280.1 68414.m07943 expressed protein                             31   0.41 
At5g56300.1 68418.m07027 S-adenosyl-L-methionine:carboxyl methyl...    29   1.3  
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    29   1.3  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    29   2.2  
At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote...    28   2.9  
At1g77000.1 68414.m08967 F-box family protein similar to GP|2155...    28   2.9  

>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -1

Query: 219 NCRWMIHFHHDCWNC-IHKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCN--YIHKC 49
           NC+   HF  DC N  +   C         C + ++C WNCR   H   +C N    H C
Sbjct: 59  NCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRC-WNCREPGHVASNCSNEGICHSC 117


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = -2

Query: 479 LRCLNLNQCYWNCRWSIHFHHDSWNCLHESCYRRISWILRCLNSNQCYWN--CRWMIHFH 306
           L C N   C+  CR      ++ + C    C    SW   C     C +N  C W+   H
Sbjct: 303 LCCKNTGPCFSCCRLP-SCGYNFFCCKRLKCCPCFSW---C-RWPSCDYNSSCGWLFCCH 357

Query: 305 HDCWNCIHKCC 273
             CW+C   CC
Sbjct: 358 WSCWSCC--CC 366


>At5g56300.1 68418.m07027 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:jasmonic acid carboxyl methyltransferase
           (JMT)[GI:13676829] and to SAM:salicylic acid carboxyl
           methyltransferase (SAMT) [GI:6002712][Clarkia breweri]
          Length = 387

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 352 IRISVTGTAGG*YTFITTVGTVSISAA---TTRCTGPALFEFESVLLELPVDD 203
           I+I+  G A G  TF TTV TV  +     T RC G    EFE+   +LP +D
Sbjct: 67  IKITDLGCATGSNTF-TTVDTVVETLQRRYTARCGGGGSPEFEAFFCDLPSND 118


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 314 HFHHDCWNCIHKCCYHQMYW 255
           HFHH   +C H  CY   YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339



 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 201 HFHHDCWNCIHKYCYRQMFW 142
           HFHH   +C H  CY   +W
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339



 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 428 HFHHDSWNCLHESCYRRISW 369
           HFHH S +C H  CY    W
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -2

Query: 383 RRISWILRCLNSNQCYWNCRWMIHFHHDCWNCIHKCCYHQMYWSCAV 243
           +R+S + R  + +     CR  +   +  ++CI K C + ++ SC +
Sbjct: 142 QRLSHVFRISDGDNICGVCRSQVDVRYGGYSCIEKTCNYVVHSSCII 188


>At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein
           low similarity to SP|Q02104 Lipase 1 precursor (EC
           3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
           immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system
           (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
           eutrophus}; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 417

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 404 CLHESCYRRISWILR-CLNSNQCYWNCRWMI-HFHHDCWNCIH 282
           C H   +    W+++ C+   + +W  + +  H HH  W+ +H
Sbjct: 296 CKHHKIWE---WLIKLCIGKREIHWKIKDITRHTHHSAWHSMH 335



 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 485 WILR-CLNLNQCYWNCR-WSIHFHHDSWNCLH 396
           W+++ C+   + +W  +  + H HH +W+ +H
Sbjct: 304 WLIKLCIGKREIHWKIKDITRHTHHSAWHSMH 335


>At1g77000.1 68414.m08967 F-box family protein similar to
           GP|21554029| F-box protein AtFBL5 from [Arabidopsis
           thaliana]; similar to F-box protein FBL2 GI:6063090 from
           [Homo sapiens]
          Length = 360

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 479 LRCLNLNQCYWNCRWSIHFHHDSWNCLHESCYRRISWILR-CLNSNQCYWNCRWMIHFHH 303
           LR LN++QC +    ++    D++  LH +C  R S ++  CLN    +  C    H  H
Sbjct: 294 LRSLNISQCTYLTPSAVQAVCDTFPALH-TCSGRHSLVMSGCLNLQSVHCACILQAHRTH 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,240,816
Number of Sequences: 28952
Number of extensions: 170348
Number of successful extensions: 433
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)