Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0586.Seq
(485 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 140 2e-32
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 82 7e-15
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 81 1e-14
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 68 1e-10
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 59 5e-08
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 54 1e-06
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 54 1e-06
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 54 2e-06
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 52 7e-06
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 52 7e-06
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 51 2e-05
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 50 3e-05
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 49 5e-05
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 48 9e-05
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 47 3e-04
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 46 3e-04
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 45 8e-04
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 45 8e-04
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 44 0.001
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 44 0.001
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 44 0.001
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 44 0.001
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 43 0.004
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 42 0.007
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 41 0.017
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 37 0.21
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 36 0.49
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 35 1.1
UniRef50_A5B4R2 Cluster: Putative uncharacterized protein; n=1; ... 33 2.6
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 33 4.5
UniRef50_Q9N4U3 Cluster: Putative uncharacterized protein; n=2; ... 32 7.9
UniRef50_A6RBE4 Cluster: Predicted protein; n=1; Ajellomyces cap... 32 7.9
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 140 bits (339), Expect = 2e-32
Identities = 68/76 (89%), Positives = 74/76 (97%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
RVK+TLA+IRKAARELLTL+EKDP+RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKIED
Sbjct: 45 RVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIED 104
Query: 303 FLERRLQTQVFKAGLA 256
FLERRLQTQVFK GLA
Sbjct: 105 FLERRLQTQVFKLGLA 120
Score = 121 bits (292), Expect = 8e-27
Identities = 55/62 (88%), Positives = 60/62 (96%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
+SIHHAR+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFSL+SP+GGGRPGRVKRKN +K
Sbjct: 121 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 180
Query: 76 GQ 71
GQ
Sbjct: 181 GQ 182
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 81.8 bits (193), Expect = 7e-15
Identities = 41/76 (53%), Positives = 52/76 (68%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
RV Y L +R A+ +L + KDPKRL EG ALLRRL +G+L Q KL++VL LK E+
Sbjct: 44 RVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEEN 103
Query: 303 FLERRLQTQVFKAGLA 256
LERRLQT V++ G A
Sbjct: 104 LLERRLQTLVYRKGFA 119
Score = 56.8 bits (131), Expect = 2e-07
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR-PGRVKRKNLR 80
+SIHHAR+LIR + I+V KQVV++PSF+VR++S I + +P GR KRKN
Sbjct: 120 KSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKNNH 179
Query: 79 KGQ 71
G+
Sbjct: 180 AGK 182
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 81.0 bits (191), Expect = 1e-14
Identities = 39/61 (63%), Positives = 49/61 (80%)
Frame = -3
Query: 444 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 265
+ELLTL+EK+P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK
Sbjct: 48 QELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKN 107
Query: 264 G 262
G
Sbjct: 108 G 108
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 68.1 bits (159), Expect = 1e-10
Identities = 34/62 (54%), Positives = 42/62 (67%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
+SI HA +L+ HIR+ KQVV+I F V LDS KH DF GGG PG VKRKN++K
Sbjct: 126 KSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRKHTDFFRHCLNGGGYPGSVKRKNVKK 185
Query: 76 GQ 71
G+
Sbjct: 186 GR 187
Score = 67.7 bits (158), Expect = 1e-10
Identities = 42/79 (53%), Positives = 53/79 (67%), Gaps = 7/79 (8%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLTL-EEKDPKRLFEGNALLRRLVRIGVLDEKQMK------LDYV 325
RVK+TL +IRKA ELL L EKDP+ LFE N LLR+LV G+L E +MK +
Sbjct: 44 RVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFTSWA 103
Query: 324 LGLKIEDFLERRLQTQVFK 268
GL+I F E++LQTQVF+
Sbjct: 104 FGLRIY-FSEKQLQTQVFE 121
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 59.3 bits (137), Expect = 5e-08
Identities = 29/41 (70%), Positives = 32/41 (78%)
Frame = -2
Query: 208 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 86
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 67
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 54.4 bits (125), Expect = 1e-06
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = -2
Query: 184 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 80
PSF+VR+DS K D SL SP GGGRPGRVK+K+L+
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLK 58
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 54.4 bits (125), Expect = 1e-06
Identities = 29/71 (40%), Positives = 44/71 (61%)
Frame = -3
Query: 468 LARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERR 289
+ + R AR LL L + R L+++L R+G++++ LD +LGL E++LERR
Sbjct: 48 IRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERR 105
Query: 288 LQTQVFKAGLA 256
LQT V+K GLA
Sbjct: 106 LQTIVYKKGLA 116
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 53.6 bits (123), Expect = 2e-06
Identities = 24/28 (85%), Positives = 28/28 (100%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLF 400
RVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 3 RVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 52.0 bits (119), Expect = 7e-06
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 128
++IH ARILI +HI+V+ Q+VN PSF+VR D+ I FSL S
Sbjct: 122 KTIHEARILIMHKHIQVKNQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 52.0 bits (119), Expect = 7e-06
Identities = 26/68 (38%), Positives = 44/68 (64%)
Frame = +2
Query: 68 TLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMM 247
T S + L ++ +++TEWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S ++
Sbjct: 10 TTSSSSSLSGHSTWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVV 69
Query: 248 DGLARPAL 271
+ L + L
Sbjct: 70 NRLGQTQL 77
Score = 43.2 bits (97), Expect = 0.003
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = +1
Query: 259 QASFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQ 405
Q L LQ++ QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQ
Sbjct: 74 QTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQ 122
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 50.8 bits (116), Expect = 2e-05
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = -3
Query: 477 KYTLARIRKAARELLTLEEKDPKRLF---EGNALLRRLVRIGVLDEKQMKLDYVLGLKIE 307
K L + RKAARE++ L+ ++ + + L+ L R G+L E +D VL LK+E
Sbjct: 45 KGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENA-DIDDVLALKVE 103
Query: 306 DFLERRLQTQVFKAGLA-SPSIMPEF 232
L+RRLQTQV++ G A SP +F
Sbjct: 104 QQLDRRLQTQVYRRGFARSPKQARQF 129
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 50.0 bits (114), Expect = 3e-05
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = -3
Query: 396 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAS 253
G + RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA+
Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLAN 113
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 49.2 bits (112), Expect = 5e-05
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = -3
Query: 354 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
D ++ KLDYVL L +E+FLERRLQT VFK+G+A
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMA 49
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 48.4 bits (110), Expect = 9e-05
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = -3
Query: 468 LARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERR 289
L + R+ AR L++ ++ + E L L + G+L + LD VL L +ED LERR
Sbjct: 49 LRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERR 106
Query: 288 LQTQVFKAGLA 256
LQT VF+ GLA
Sbjct: 107 LQTLVFRKGLA 117
Score = 33.5 bits (73), Expect = 2.6
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 241 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG-GGRPGRVK 95
AR LI HI V +VV PS++V ++ I ++ SPF P R K
Sbjct: 123 ARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 46.8 bits (106), Expect = 3e-04
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = -3
Query: 468 LARIRKAARELLTLEEKDPKR-LFEG--NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFL 298
L + RKAARELL L + +FE + L+ + R G+L +D VL LK+ L
Sbjct: 48 LRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGP-DADIDNVLALKVPAQL 106
Query: 297 ERRLQTQVFKAGLA 256
ERRLQT V++ GLA
Sbjct: 107 ERRLQTLVYRKGLA 120
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 46.4 bits (105), Expect = 3e-04
Identities = 29/77 (37%), Positives = 44/77 (57%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
+++ L R+ AR+L++ ++ E L L R G+L ++ LD VL L +E
Sbjct: 43 KMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLES 100
Query: 303 FLERRLQTQVFKAGLAS 253
LERRLQT VF+ GLA+
Sbjct: 101 ILERRLQTLVFRKGLAN 117
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 45.2 bits (102), Expect = 8e-04
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 119
+S+HHAR+LI R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 125 KSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
Score = 44.4 bits (100), Expect = 0.001
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 9/79 (11%)
Frame = -3
Query: 465 ARIRKAARELLTLEEKDPKRL-FEGNALLRRLVRIGVL------DEKQMK--LDYVLGLK 313
A+ ++ AR LLT +P+ + G +LLRRL++ G+L D++++ L+ VL L
Sbjct: 48 AKDKERARILLT--STNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLT 105
Query: 312 IEDFLERRLQTQVFKAGLA 256
I +LERRLQ +VF AGLA
Sbjct: 106 INHYLERRLQFRVFAAGLA 124
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 45.2 bits (102), Expect = 8e-04
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLT-LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIE 307
R + L+ IR AR L L D + +++RL R +L +K LD VL L +E
Sbjct: 43 RSEAMLSSIRSQARYLRARLRASDANAQKQLERMIKRLSRYKILSDKAT-LDDVLSLTVE 101
Query: 306 DFLERRLQTQVFKAGLA 256
+ L+RRLQT VFK LA
Sbjct: 102 NILDRRLQTIVFKKNLA 118
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 44.4 bits (100), Expect = 0.001
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Frame = -3
Query: 468 LARIRKAARELLTLEE-----KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
L + R AR LL + +D + + ++++L +G+L E KL+ VL LK++D
Sbjct: 48 LRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDD 106
Query: 303 FLERRLQTQVFKAGLAS 253
+ERRLQT +++ G A+
Sbjct: 107 IMERRLQTIIYRKGFAN 123
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 44.4 bits (100), Expect = 0.001
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = -3
Query: 459 IRKAARELL--TLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 286
I + AR LL T EE+ P + +L ++G +++ ++LD +L L + LERRL
Sbjct: 53 ITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRL 108
Query: 285 QTQVFKAGLA 256
QT V++ GLA
Sbjct: 109 QTIVYRMGLA 118
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 44.4 bits (100), Expect = 0.001
Identities = 29/69 (42%), Positives = 40/69 (57%)
Frame = -3
Query: 462 RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQ 283
R R+ AR +L ++ + R + LL LVR G + KL+ VL L +ED L RRLQ
Sbjct: 50 RYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQ 106
Query: 282 TQVFKAGLA 256
+ VFK GL+
Sbjct: 107 SLVFKRGLS 115
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 44.4 bits (100), Expect = 0.001
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = -3
Query: 399 EGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 256
+ +L +L+R G++ + +D +L LK E+ LERRLQTQV + GLA
Sbjct: 78 QSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLA 124
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 42.7 bits (96), Expect = 0.004
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = -3
Query: 471 TLARIRKAARELLTLEEKDPKRLFEGNA-LLRRLVRIGVLDEKQMKLDYVLGLKIEDFLE 295
T+AR +A L ++ + + E L +L ++GVL E +LD VL L ++D LE
Sbjct: 43 TIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLE 101
Query: 294 RRLQTQVFKAGLA 256
RRLQT + + GLA
Sbjct: 102 RRLQTMLVRKGLA 114
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 41.9 bits (94), Expect = 0.007
Identities = 28/76 (36%), Positives = 42/76 (55%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
+V+ ++R+R R LL+ + ++ R+V+ G+L E L+ VL +
Sbjct: 43 KVQSEISRLRGNVRVLLSGSSSHDT----SDKIIARMVKFGIL-ENGATLEKVLDITPNA 97
Query: 303 FLERRLQTQVFKAGLA 256
FLERRLQT VFK GLA
Sbjct: 98 FLERRLQTVVFKKGLA 113
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 40.7 bits (91), Expect = 0.017
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = -2
Query: 223 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 80
+R R R+ + IP + VR++ K IDFS GGGRPGRVKRK L+
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLK 182
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 37.1 bits (82), Expect = 0.21
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -2
Query: 166 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR 80
+DS KH DFSL SP G R +VKRK L+
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLK 29
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 35.9 bits (79), Expect = 0.49
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = -3
Query: 468 LARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERR 289
+ ++RK A L L+E DP R L+ RL +GV+ K KL + + F ERR
Sbjct: 50 VGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KNRKLVDCTKVTVSSFCERR 107
Query: 288 L 286
L
Sbjct: 108 L 108
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 34.7 bits (76), Expect = 1.1
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +3
Query: 123 NGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA 242
+G+ KSMC S RT G FT CL TRI RIK A
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRA 97
>UniRef50_A5B4R2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 451
Score = 33.5 bits (73), Expect = 2.6
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Frame = -3
Query: 456 RKAARELLTLEEKDP-KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIE---DFLERR 289
RK A + T E + P +R + LR V + + +Q+KL VL L +E ++L R
Sbjct: 305 RKVATK--TDERETPIERAMQVTETLRVQVEVQKILHEQLKLQKVLQLNLEQNGEYLRRI 362
Query: 288 LQTQVFKAGLASPSIMPEF*SGKGIFVSAS 199
L+ Q KAG+A PS+M + + I +S+S
Sbjct: 363 LEDQ-HKAGVALPSLMGSHSNPQPIPLSSS 391
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 32.7 bits (71), Expect = 4.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 266 LAWRVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 165
L VHPSC + D + CP +CE P + C P
Sbjct: 134 LCGNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q9N4U3 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 382
Score = 31.9 bits (69), Expect = 7.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 187 CSQLACGHEYAFAGSKFWHDGW-TRQASFEHLRLQTTLQEVLNL 315
C + CG E+ F K WH+G T +FE L+ + T E+ +L
Sbjct: 152 CQRPGCGREFCFKCRKVWHEGTRTCSKTFEQLK-KITENEINDL 194
>UniRef50_A6RBE4 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 675
Score = 31.9 bits (69), Expect = 7.9
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = -3
Query: 465 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLE 295
+R +K E L EE+ KR E N L R ++I L+EK K+ GL+ DF E
Sbjct: 325 SRKKKRQAERLKKEEEKKKRDAERNRL--RKLKIEQLEEKIEKIKAAAGLRTSDFSE 379
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 458,189,294
Number of Sequences: 1657284
Number of extensions: 9295097
Number of successful extensions: 27421
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 26640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27410
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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