Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0586.Seq
         (485 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   5.9  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   5.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.9  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 248 PSCQNFDPAKAYSCP 204
           P C+N + A  ++CP
Sbjct: 144 PECKNEEVAGGFTCP 158


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 248 PSCQNFDPAKAYSCP 204
           P C+N + A  ++CP
Sbjct: 144 PECKNEEVAGGFTCP 158


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 432 TLEEKDPKRLFEGNALLR 379
           T EEK P+  F G  L R
Sbjct: 225 TAEEKRPRTAFSGAQLAR 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,703
Number of Sequences: 336
Number of extensions: 2311
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)