Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0586.Seq
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   130   1e-31
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   129   2e-31
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    32   0.040
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   1.1  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.1  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   6.1  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   6.1  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    25   8.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.0  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  130 bits (313), Expect = 1e-31
 Identities = 61/76 (80%), Positives = 71/76 (93%)
 Frame = -3

Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
           RV  TL++IR+AARELLTL+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IED
Sbjct: 44  RVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIED 103

Query: 303 FLERRLQTQVFKAGLA 256
           FLERRLQTQVFK GLA
Sbjct: 104 FLERRLQTQVFKLGLA 119



 Score =  104 bits (250), Expect = 6e-24
 Identities = 46/62 (74%), Positives = 54/62 (87%)
 Frame = -2

Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
           +SIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR 
Sbjct: 120 KSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRS 179

Query: 76  GQ 71
            Q
Sbjct: 180 QQ 181


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  129 bits (312), Expect = 2e-31
 Identities = 61/76 (80%), Positives = 71/76 (93%)
 Frame = -3

Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
           RV  TL++IR+AARELLTL+EKDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IED
Sbjct: 44  RVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIED 103

Query: 303 FLERRLQTQVFKAGLA 256
           FLERRLQTQVFK GLA
Sbjct: 104 FLERRLQTQVFKLGLA 119



 Score =  103 bits (247), Expect = 1e-23
 Identities = 45/59 (76%), Positives = 53/59 (89%)
 Frame = -2

Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 80
           +SIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 120 KSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 32.3 bits (70), Expect = 0.040
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 477 KYTL--ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
           KY +   + R+ A  L  L+  DP RL   N LL +L  +G+L  K    D      +  
Sbjct: 46  KYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSA 105

Query: 303 FLERRL 286
              RRL
Sbjct: 106 ICRRRL 111


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 342 MKLDYVLGLKIEDFLERRLQTQVFKAGLASPSIMPEF 232
           +++D  L + +E FL++   TQ+    L +P I+ EF
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPC-LIAPEILLEF 167


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 249 MDSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSP 425
           +D+P  + TPA   DA  SPQS    H    +V  PV    PD+ +    ++    PSP
Sbjct: 28  LDTPLAIHTPAKGFDADLSPQSLYDLH----TVTTPVTPLAPDEWDFSLDQSSGVIPSP 82


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 483  RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGL 316
            R++YT  R+R  AR+ LT        LF   + L+    + +L++KQ +   +L L
Sbjct: 1566 RLEYTALRLRSYARKTLT-NSASQNALF---SFLKANFDVALLEQKQTETSNLLRL 1617


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 188 HPIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEE 87
           HP +    GL Q H +   ++  W SSW   ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -1

Query: 287 CRRRCSKLAWRVHPSCQNFDPAKAYSCPQASCEH 186
           C+RR S   W+    C N  P  A    +  C H
Sbjct: 136 CKRRYSIKLWKTFTDCFNCMPVAAVIDEKIFCMH 169


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +1

Query: 82   GGSSS*HVQDDLHRMEISERSQCACQSPGAQ*MMG---CSQLACGHEY-AFAGSKFWHDG 249
            G S S  ++++L  ++         +S G Q  +G    + L   + + + AG+  ++D 
Sbjct: 2027 GHSDSAWIEENLSDLKFLLEKSLENESVGVQSAIGNFVSTILTLSNTHPSIAGNPIFNDI 2086

Query: 250  WTRQASFEHLRLQTTLQ 300
            WT  AS+   RLQ+  Q
Sbjct: 2087 WTSIASWTERRLQSCSQ 2103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,897
Number of Sequences: 5004
Number of extensions: 36041
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)