Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0586.Seq
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 105 2e-23
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 105 2e-23
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 105 2e-23
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 81 5e-16
07_03_1357 - 25982861-25983068,25983354-25983361 61 4e-10
03_06_0038 + 31227349-31227621,31228120-31228212,31229439-312295... 28 3.5
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552... 27 6.0
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 105 bits (252), Expect = 2e-23
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
+SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 122 KSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 181
Score = 103 bits (247), Expect = 8e-23
Identities = 50/76 (65%), Positives = 62/76 (81%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
RV+Y L+RIR AR LLTL+EK+P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+
Sbjct: 46 RVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVEN 105
Query: 303 FLERRLQTQVFKAGLA 256
FL RRLQT VFKAG+A
Sbjct: 106 FLARRLQTLVFKAGMA 121
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 105 bits (252), Expect = 2e-23
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
+SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 145 KSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 204
Score = 103 bits (247), Expect = 8e-23
Identities = 50/76 (65%), Positives = 62/76 (81%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
RV+Y L+RIR AR LLTL+EK+P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+
Sbjct: 69 RVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVEN 128
Query: 303 FLERRLQTQVFKAGLA 256
FL RRLQT VFKAG+A
Sbjct: 129 FLARRLQTLVFKAGMA 144
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 105 bits (252), Expect = 2e-23
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = -2
Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
+SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 338 KSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 397
Score = 103 bits (247), Expect = 8e-23
Identities = 50/76 (65%), Positives = 62/76 (81%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
RV+Y L+RIR AR LLTL+EK+P+R+FEG ALLRR+ R G+L + Q KLDYVL L +E+
Sbjct: 262 RVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVEN 321
Query: 303 FLERRLQTQVFKAGLA 256
FL RRLQT VFKAG+A
Sbjct: 322 FLARRLQTLVFKAGMA 337
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 81.0 bits (191), Expect = 5e-16
Identities = 39/61 (63%), Positives = 49/61 (80%)
Frame = -3
Query: 444 RELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKA 265
+ELLTL+EK+P+R+FEG ALLR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK
Sbjct: 48 QELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKN 107
Query: 264 G 262
G
Sbjct: 108 G 108
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 61.3 bits (142), Expect = 4e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -2
Query: 211 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 86
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 44
>03_06_0038 +
31227349-31227621,31228120-31228212,31229439-31229575,
31229953-31231030,31231757-31232374
Length = 732
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 349 KTDETRLCAWSED*GLLGASSADAGVQSWPGESIHHARI 233
KTD RL S+ +L S D +W SIHH ++
Sbjct: 117 KTDNQRLSPDSQQVSVLAESHCDLASGNWKEISIHHKKM 155
>07_03_0696 -
20754773-20754821,20754930-20755028,20755107-20755226,
20755317-20755402,20756013-20756109,20756181-20756268,
20756358-20756454,20756797-20756892,20757029-20757125,
20757571-20757689,20758559-20758616,20758751-20758857
Length = 370
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 371 FVLEYWMKNR*NSIMCLV*RLRTSWSVVC 285
FV +W + + M LV RL TSW+VVC
Sbjct: 273 FVDAFWNSKKQSFTMHLV-RLMTSWAVVC 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,775,626
Number of Sequences: 37544
Number of extensions: 273735
Number of successful extensions: 804
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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