Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0586.Seq
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             137   4e-33
SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)                  28   3.6  
SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)           28   4.7  
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   8.2  
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)                    27   8.2  
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  137 bits (332), Expect = 4e-33
 Identities = 68/76 (89%), Positives = 72/76 (94%)
 Frame = -3

Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
           RVK TLA+IRKAARELLTLEEKDP+RLFEGNALLRRLVRIGVLDE + KLDYVLGL+IED
Sbjct: 42  RVKLTLAKIRKAARELLTLEEKDPRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIED 101

Query: 303 FLERRLQTQVFKAGLA 256
           FLERRLQTQVFK GLA
Sbjct: 102 FLERRLQTQVFKLGLA 117



 Score =  120 bits (288), Expect = 8e-28
 Identities = 52/62 (83%), Positives = 60/62 (96%)
 Frame = -2

Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
           +SIHHAR+LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFSL SP+GGGRPGRVKRKN++K
Sbjct: 118 KSIHHARVLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKK 177

Query: 76  GQ 71
           GQ
Sbjct: 178 GQ 179


>SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -3

Query: 453 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKL 334
           ++A ELL   EK+ KRL E NA L    R  V++ +++KL
Sbjct: 24  RSAAELLDKSEKERKRLSEKNAQLTINERDLVMELERLKL 63


>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
          Length = 1405

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -3

Query: 402  FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLASPSIMPEF*SG 223
            F G A+  +    G+L   +  LD ++G K ED+ +RRL+ ++ K   A  S+     S 
Sbjct: 1139 FRGEAITFKATTAGILATLEHCLD-LMG-KREDYWQRRLEREIEKRKKAEASVKESVVSA 1196

Query: 222  K 220
            K
Sbjct: 1197 K 1197


>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
          Length = 398

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
 Frame = -3

Query: 459 IRKAARELLTLEEKDPKRL-------FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDF 301
           + K  R   T  EKDPKR+       + G AL   ++ +G+  E   +  Y LGL +E+ 
Sbjct: 100 VGKWIRTQQTYYEKDPKRVYYLSLEYYMGRALSNTMINLGIQGECD-EAAYQLGLDMEEL 158

Query: 300 LERRLQTQVFKAGL 259
            E      +   GL
Sbjct: 159 EEMEEDAGLGNGGL 172


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 337  TRLCAWSED*GLLGASSADAGVQSWP-GESIHHA 239
            T   AW+ + G  GAS A   + SWP G + H A
Sbjct: 962  TASSAWNNERGKYGASRARLNLTSWPQGWTAHEA 995


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = -1

Query: 242  CQNFDPAKAYSCPQASCEHP-IIYCAPGLWQAH*LLSEISIRWRSSWTCQEEEPPQG 75
            C NFD    + C   S  H   IYC  G       L  +++     W C+ + P  G
Sbjct: 953  CMNFDGG--FGCRPGSESHAGQIYCCLGALSITHSLHHVNVDMLGWWLCERQLPSGG 1007


>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
          Length = 499

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 303 SPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPS 422
           SP+ +D  H  VSSV    LQ   DD   H L+  ++ PS
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPS 257


>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 343 DETRLCAWSED*GLLGASSADAGVQSW 263
           D  + CAWS +   + +SSAD  V  W
Sbjct: 89  DRVKSCAWSPNGEYVASSSADGRVTLW 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,229,202
Number of Sequences: 59808
Number of extensions: 305420
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)