Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0586.Seq
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   142   2e-34
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    32   0.25 
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   2.4  
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    28   3.1  
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    27   9.5  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  142 bits (343), Expect = 2e-34
 Identities = 68/76 (89%), Positives = 74/76 (97%)
 Frame = -3

Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
           RVKYTLA++RKAARELLTLE+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+ED
Sbjct: 44  RVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVED 103

Query: 303 FLERRLQTQVFKAGLA 256
           FLERRLQTQVFK GLA
Sbjct: 104 FLERRLQTQVFKLGLA 119



 Score =  112 bits (269), Expect = 1e-25
 Identities = 50/61 (81%), Positives = 58/61 (95%)
 Frame = -2

Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 77
           +SIHHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRK
Sbjct: 120 KSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRK 179

Query: 76  G 74
           G
Sbjct: 180 G 180


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 187 CSQLACGHEYAFAGSKFWHDGW-TRQASFEHLRLQTTLQEVLNL 315
           C +  CG E+ F   K WH+G  T   +FE L+ + T  E+ +L
Sbjct: 152 CQRPGCGREFCFKCRKVWHEGTRTCSKTFEQLK-KITENEINDL 194


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 184 GCSQLACGHEYAFAGSKFWH 243
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 288 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 422
           +DA +  Q+S  A +  + ++H V + E    +GH+  + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 256 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 128
           ES+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S
Sbjct: 121 ESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163


>U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical
           protein C06G1.5 protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 235 FWHDG--WTRQASFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSN 366
           FW+D   W+ + + E LR    LQ + NLQ    I   L +  Y +
Sbjct: 282 FWNDAHSWSGRLTTERLRKGGVLQAIRNLQFDDDINKSLRYFSYEH 327


>Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical
           protein K10G4.3 protein.
          Length = 202

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 426 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 262
           +EK  K ++E N  LR    I    +  ++L  ++  +IEDF+E  L   + K G
Sbjct: 138 KEKIRKNVYERNEQLRDFKNIPYGFQPTLELHNLMQDQIEDFIEEYLGQYLEKLG 192


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
           complex protein protein12 protein.
          Length = 1847

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 185 DVHNLLADTNMPLPDQNSGMMDGLARP 265
           +VH++L +TN+ L  + SG+ +G A P
Sbjct: 738 NVHSMLINTNVELVLRGSGVCNGAATP 764


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 273 TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEG 389
           T A     PR P+SS   H+RV + +    + + DD EG
Sbjct: 89  TEAHRYHPPRQPRSSAPTHHRVPADYPSDEEDDYDDTEG 127


>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
           protein Y37B11A.2 protein.
          Length = 1133

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 197 LLADTNMPLPDQNSGMMDGLARPALNTCVCRRRSKK 304
           LL DT MP+PD  S  +  ++    N  VCR  S K
Sbjct: 354 LLVDTKMPMPDAASSEIVSVSLAIYND-VCRCSSPK 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,368,394
Number of Sequences: 27780
Number of extensions: 218643
Number of successful extensions: 639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)