Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0586.Seq
(485 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 115 1e-26
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 112 1e-25
At5g01850.1 68418.m00104 protein kinase, putative similar to pro... 30 0.72
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 2.9
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 28 2.9
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 28 2.9
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 5.1
At3g58270.1 68416.m06496 meprin and TRAF homology domain-contain... 27 5.1
At5g43380.2 68418.m05303 serine/threonine protein phosphatase PP... 27 6.7
At5g43380.1 68418.m05302 serine/threonine protein phosphatase PP... 27 6.7
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 27 6.7
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 27 6.7
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai... 27 8.9
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 27 8.9
At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containi... 27 8.9
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 115 bits (277), Expect = 1e-26
Identities = 55/76 (72%), Positives = 67/76 (88%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
RV+YTL+RIR AARELLTL+EK+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+
Sbjct: 46 RVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVEN 105
Query: 303 FLERRLQTQVFKAGLA 256
FLERRLQT VFK+G+A
Sbjct: 106 FLERRLQTIVFKSGMA 121
Score = 107 bits (256), Expect = 5e-24
Identities = 48/66 (72%), Positives = 58/66 (87%)
Frame = -2
Query: 271 QSWPGESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKR 92
+S +SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR
Sbjct: 117 KSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKR 176
Query: 91 KNLRKG 74
+N R G
Sbjct: 177 RNERAG 182
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 112 bits (270), Expect = 1e-25
Identities = 53/76 (69%), Positives = 66/76 (86%)
Frame = -3
Query: 483 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIED 304
RV+Y+L+RIR AAR+LLTL+EK P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+
Sbjct: 46 RVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVEN 105
Query: 303 FLERRLQTQVFKAGLA 256
FLERRLQT VFK+G+A
Sbjct: 106 FLERRLQTIVFKSGMA 121
Score = 106 bits (254), Expect = 9e-24
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = -2
Query: 271 QSWPGESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKR 92
+S +SIHH+R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR
Sbjct: 117 KSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKR 176
Query: 91 KN 86
+N
Sbjct: 177 RN 178
>At5g01850.1 68418.m00104 protein kinase, putative similar to
protein kinase [Arabidopsis thaliana]
gi|1054633|emb|CAA63387; contains protein kinase domain,
Pfam:PF00069
Length = 333
Score = 30.3 bits (65), Expect = 0.72
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 113 TSTEWRFQREVNVLARVQAHN 175
+S E RF REVN+++RVQ HN
Sbjct: 57 SSLESRFVREVNMMSRVQHHN 77
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 346 TDETRLCAWSED*GLLGASSADAGVQSW 263
T E CAWS LL + S DA + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -3
Query: 459 IRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQT 280
++K + ++ DP R+ + LL +L +GV+ ++ L L + F RRL T
Sbjct: 53 VQKLTNIMKQMDPADPFRIQMTDMLLEKLYNMGVIPTRK-SLTLTERLSVSSFCRRRLST 111
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 281 RRCSKLAWRVHPSCQNFDPAKAYSCPQASCEH 186
RR L W++ K Y CP+ SC H
Sbjct: 82 RRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVH 113
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 378 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 277
RL + VLDE++ +D LG+K ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506
>At3g58270.1 68416.m06496 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 343
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 217 AFAGSKFWHDGWTRQASFEHLRLQTTLQEVLN 312
A AGS+F DGW R A F H + L + L+
Sbjct: 55 AVAGSEFLPDGWRRHAYF-HFSVVNQLSDELS 85
>At5g43380.2 68418.m05303 serine/threonine protein phosphatase PP1
isozyme 7 (TOPP7) identical to SP|O82733
Serine/threonine protein phosphatase PP1 isozyme 7 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 327
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 287 CRRRCSKLAWRVHPSCQNFDPAKAYSCPQASCEH 186
C+RR S WR+ C N P A + C H
Sbjct: 136 CKRRFSVKIWRIFTDCFNCLPVAALIDERIFCMH 169
>At5g43380.1 68418.m05302 serine/threonine protein phosphatase PP1
isozyme 7 (TOPP7) identical to SP|O82733
Serine/threonine protein phosphatase PP1 isozyme 7 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 331
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 287 CRRRCSKLAWRVHPSCQNFDPAKAYSCPQASCEH 186
C+RR S WR+ C N P A + C H
Sbjct: 136 CKRRFSVKIWRIFTDCFNCLPVAALIDERIFCMH 169
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 281 RRCSKLAWRVHPSCQNFDPAKAYSCPQASCEH 186
RR L W++ K Y CP+ SC H
Sbjct: 100 RRGHNLPWKLKQKSTKEVKRKVYLCPEPSCVH 131
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 281 RRCSKLAWRVHPSCQNFDPAKAYSCPQASCEH 186
RR L W++ K Y CP+ SC H
Sbjct: 101 RRGHNLPWKLKQKSNKEVRRKVYLCPEPSCVH 132
>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 653
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 110 TTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGLARPA 268
T + +RF+ E+ VL + K W V A + + N+ + DG + PA
Sbjct: 60 TKNQPYRFESEITVLNNGRDELKSWQVFVKFAHREILVSATNAVLSDGSSLPA 112
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 281 RRCSKLAWRVHP-SCQNFDPAKAYSCPQASCEH 186
RR L W++ S + K Y CP+ASC H
Sbjct: 118 RRGHNLPWKLKQRSNKEVIRKKVYVCPEASCVH 150
>At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 602
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 474 YTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLD 331
+TL I KA R + LE+ +F NAL+ ++ +D+ LD
Sbjct: 135 FTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLD 182
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,855,453
Number of Sequences: 28952
Number of extensions: 204887
Number of successful extensions: 624
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -