Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0585.Seq
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.094
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    27   1.5  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   2.7  
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    25   4.7  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    25   4.7  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   6.2  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   6.2  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    25   6.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   6.2  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   8.2  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.2  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   8.2  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.1 bits (67), Expect = 0.094
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = -2

Query: 215 SSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSSLFIFSLTS 57
           SS FS++S    S  S +QPSVS    S ++++AP    +S+ SS  + S +S
Sbjct: 172 SSTFSSLS----SSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSS 220


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 243 GHLQLLEGDDEKAYLAKTVEE 305
           G+L +LEGD  KA+LA TVE+
Sbjct: 822 GNLNVLEGDKRKAFLA-TVED 841


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 303 LPRF*RDTLSHRHLQAVEDDL-RIAYLNLSIFNLFNHFFSGVFFRQSDPTFGVTRFEI 133
           L  F    +S   L A+ +++ +IAYL+    N+ N +F G F R    T     + I
Sbjct: 304 LEEFAPQDISRSLLLAISNNIGQIAYLHAQKHNVQNIYFGGSFIRNHVQTMHTLTYAI 361


>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 106 KLGAEVAYIDFKSGDTEGWVRLSKENAAKEMVEKIEDGKIKIC 234
           KLG  + Y+ FK  DT+  + + K++  K+    + D   K C
Sbjct: 20  KLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEKDC 62


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 361 SKGDKAVERESP-KIMKRHLQRKSKRSNQNSQTALR 465
           SK D  V+RESP +I  R   RK++R      +AL+
Sbjct: 105 SKSDIIVQRESPEEIETRKKDRKNRREMLKRTSALQ 140


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 4    QQEKEELKLPTGSVFHFSEVNEKMKREDL 90
            +++ EEL+   G V+H  E NE  K ++L
Sbjct: 960  EEDIEELETNRGVVYHLLEENETGKLDEL 988


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 233 HILIFPSSIFSTISLAAFSLDSLTQPSVSPD 141
           ++ IFPS+  S+ +   ++ DSL+ P  S D
Sbjct: 476 YVRIFPSTTLSSTASGYYTPDSLSTPEPSID 506


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
 Frame = -2

Query: 395 GLSLSTALSPFEILSFTELVIPHVPAFFGHLFHGFSEIRFL-IVTFKQLKMTSESHILIF 219
           G +   A S  + L   +L I        +LF G   ++ L  +    L + +      +
Sbjct: 111 GFTALRAFSQCQKLKKIDLSILSEKIDLQYLFGGIQHLKHLEYIILPYLSIPAPMCTECW 170

Query: 218 PSSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSSL 78
           PSS+         + D L +    P LKS+  T  P L  A   S L
Sbjct: 171 PSSLTFVGFSGGLTDDFLAESVFPPSLKSINITQCPLLTDAGIFSLL 217


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 215 SSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRAS 93
           SS  +T  L   S  SL   + SP + S   T  PN+ RAS
Sbjct: 6   SSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRAS 46


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 167 LTQPSVSPDLKSMYATSAPNLVRASFKSSLFIFSLTSL 54
           L +P V     ++YATSAP  +  S + SL + S T+L
Sbjct: 111 LVRPVVGTKKHAVYATSAPKSM--SLQDSLSVPSATAL 146


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 55  SEVNEKMKREDLKDALTKLGAEVAYIDFKSGDTEGWVRLSKENAAKEMVEKIEDGK 222
           +E N  +  ++  D+  K+G      + +    E   RL  ENA  +M  KIE+ +
Sbjct: 177 TEYNRALDNKNTGDSQKKVGFFKPKSNAQLTKLEDEARLKAENAESDMHSKIENAQ 232


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +1

Query: 127 YIDFKSGDTEGWVRLSKENAAKEMVEKIEDGKIKICDSEVIFNCLKVTMRK 279
           Y+    GD   W+R     A   ++ K   GK K+ + ++++ C+   +R+
Sbjct: 782 YLTDTRGDVGSWIRKPAMKAISSLLVKDSSGK-KLSE-DIVWCCISYIIRQ 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,000
Number of Sequences: 5004
Number of extensions: 30910
Number of successful extensions: 123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)