Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0585.Seq
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1653 + 38922265-38923086 31 0.38
12_02_0859 - 23751198-23753258 30 1.2
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 30 1.2
05_01_0282 - 2191263-2192462 29 2.0
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397... 29 2.7
04_04_0050 - 22360294-22361804,22362087-22362378,22363367-223634... 29 2.7
02_01_0402 - 2934074-2937217 29 2.7
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 29 2.7
12_01_0731 - 6516894-6517473,6517485-6519574 28 3.5
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089... 28 4.7
02_05_0848 + 32195610-32195625,32196078-32197585 27 6.2
11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677 27 8.2
04_04_0049 - 22356139-22357649,22357764-22357995 27 8.2
02_01_0403 - 2938242-2941334 27 8.2
>01_06_1653 + 38922265-38923086
Length = 273
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 392 LSLSTALSPFEILSFTELVIPHVPAFFGHL 303
LSL + +PFE L FT +++P +F GHL
Sbjct: 159 LSLPISFAPFESLIFTSIMVPQA-SFIGHL 187
>12_02_0859 - 23751198-23753258
Length = 686
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 46 FHFSEVNEKMKREDLKDALTKLGAEVAYIDFKSGDT-EGWV 165
F F ++N+ DL ++ A A ++ KSGDT WV
Sbjct: 152 FEFGDINDNHVGVDLNSLVSNASASAAPVNLKSGDTIVAWV 192
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 331 GITSSVK-ERISKGDKAVERESPKIMKRHLQRKSKRSNQNSQ 453
GI S ER+SKGD ++ +P ++HLQ++ +R Q +
Sbjct: 363 GIGSEASAERMSKGDANLQLLNPAEQEKHLQKQKRRRLQGRE 404
>05_01_0282 - 2191263-2192462
Length = 399
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 155 SVSPDLKSMYATSAPNLVRASFKSSLFIFSLTSLKWKTLP 36
+V PD KS + N + S+ S++ KWKT+P
Sbjct: 222 TVHPDAKSAFVDGMVNFI--SYNSAIIAVDTEGKKWKTIP 259
>06_01_0558 -
3968211-3969475,3970198-3970266,3970374-3970529,
3971075-3971405
Length = 606
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 246 DLRIAYLNLSIFNLFNHFFSGVF 178
D+ I + NLS NL +FF G+F
Sbjct: 387 DINITFPNLSYLNLSKNFFQGIF 409
>04_04_0050 - 22360294-22361804,22362087-22362378,22363367-22363420,
22363627-22363718,22364713-22364915,22365892-22366133,
22366205-22366330,22366800-22366907,22367394-22367457,
22367543-22367681,22367867-22368038,22368198-22368482
Length = 1095
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -2
Query: 377 ALSPFEILSFTELVIPHVPAFFGHLFHGFSEIR 279
AL+ +LSF+++V+ + FG++ HG + +R
Sbjct: 999 ALAEMMLLSFSDVVVTSAASTFGYVGHGLAGLR 1031
>02_01_0402 - 2934074-2937217
Length = 1047
Score = 28.7 bits (61), Expect = 2.7
Identities = 31/115 (26%), Positives = 47/115 (40%)
Frame = -2
Query: 380 TALSPFEILSFTELVIPHVPAFFGHLFHGFSEIRFLIVTFKQLKMTSESHILIFPSSIFS 201
T P+EI T L H+ +F + G + ++ L + I P SI
Sbjct: 241 TGAIPYEIFDITSL--KHL-SFPNNQLEGSIDGITKLINLVTLDLGGNKFIGSIPHSIGQ 297
Query: 200 TISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSSLFIFSLTSLKWKTLP 36
L F LD+ ++S +L S + NLV K + F LT + + TLP
Sbjct: 298 LKRLEEFHLDN---NNMSGELPSTLS-DCTNLVTIDLKKNNFSGELTKVNFSTLP 348
>01_05_0699 -
24376987-24377154,24377259-24377406,24377530-24377645,
24377743-24377925,24377998-24378186,24378273-24378497,
24378514-24378759,24378836-24378983,24379126-24379241,
24379441-24379497,24379735-24379923,24380001-24380150,
24380323-24380404,24380484-24380601,24380713-24380899,
24381044-24381138,24381223-24381277,24381376-24381567,
24381657-24381853,24382534-24382684
Length = 1003
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 284 IRFLIVTFKQLKMTSESHILIFPSSIF-STISLAAFSLDS 168
+RFL+++F LK + + FPS IF S I+L + L S
Sbjct: 134 LRFLVISFADLKNWKVYYNVAFPSLIFDSKITLLSLKLAS 173
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 279 LSHRHLQAVEDDLRIAYLNLSIFNLFNHFFSGVF 178
L + HL + A NLS+ L N+ F GVF
Sbjct: 269 LQYNHLSGPVPEFLAALPNLSVLQLANNMFEGVF 302
>02_03_0155 +
15805683-15805743,15805824-15806105,15808293-15808959,
15809440-15810490
Length = 686
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 70 KMKREDLKDALTKLGAEVAYIDFKSGDTEGWVRLSKENAAKE 195
++ ED K+ TK+ AY + DTE R KEN K+
Sbjct: 539 RVLEEDSKNKRTKISESGAYTSSSNQDTEEENRRKKENRRKK 580
>02_05_0848 + 32195610-32195625,32196078-32197585
Length = 507
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 377 ALSPFEILSFTELVIPHVPAFFGHLFHGFSEIR 279
AL+ +LSF + V+ + FG++ HG + +R
Sbjct: 410 ALAEIYLLSFCDRVVTSAVSTFGYIAHGLAGVR 442
>11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677
Length = 174
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 34 TGSVFHFSEVNEKMKREDLKDALTKLGAEVAY-IDF-KSGDTEG 159
TG+ H S ++ + ED+K+ +++G Y I++ KSG ++G
Sbjct: 66 TGTKLHISNLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKG 109
>04_04_0049 - 22356139-22357649,22357764-22357995
Length = 580
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -2
Query: 377 ALSPFEILSFTELVIPHVPAFFGHLFHGFSEIR 279
AL+ +LSF+++ + + FG++ HG + +R
Sbjct: 484 ALAEMMLLSFSDVALTSAASTFGYVSHGLAGLR 516
>02_01_0403 - 2938242-2941334
Length = 1030
Score = 27.1 bits (57), Expect = 8.2
Identities = 29/111 (26%), Positives = 43/111 (38%)
Frame = -2
Query: 368 PFEILSFTELVIPHVPAFFGHLFHGFSEIRFLIVTFKQLKMTSESHILIFPSSIFSTISL 189
P+E+ + T L H+ +F + G E ++ L + I P SI L
Sbjct: 229 PYELFNITSL--KHL-SFPNNQLEGSIEGIMKLINLVTLDLGGNKLIGSIPDSIGQLKRL 285
Query: 188 AAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSSLFIFSLTSLKWKTLP 36
LD+ P S NLV KS+ F LT++ + TLP
Sbjct: 286 EKLHLDNNNMSGELPWTLS----DCTNLVTIDLKSNSFSGKLTNVNFSTLP 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,150,854
Number of Sequences: 37544
Number of extensions: 175060
Number of successful extensions: 641
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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