Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0585.Seq
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07) 65 3e-11
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.90
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 29 1.6
SB_24629| Best HMM Match : MORN_2 (HMM E-Value=0.21) 29 2.1
SB_27557| Best HMM Match : Ras (HMM E-Value=0) 29 2.1
SB_13923| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_15380| Best HMM Match : RA (HMM E-Value=0.11) 28 3.6
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 28 4.8
SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0) 28 4.8
SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_4671| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_8141| Best HMM Match : Rho_N (HMM E-Value=0.011) 27 8.4
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
Length = 349
Score = 64.9 bits (151), Expect = 3e-11
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +1
Query: 7 QEKEELKLPTGSVFHFSEVNEKMKREDLKDALTKLGAEVAYIDFKSGDTEGWVRLSKENA 186
+E+EE K G+V HF++V E+ REDLK+ + ++A+++F GDTEG +R KE
Sbjct: 193 EEEEEFKYEKGAVLHFTDVGEQTSREDLKELFGE-HEDIAWVNFSRGDTEGHIRFLKEGG 251
Query: 187 AKEMVEKI-EDGKIKICDSEVIFNCLK 264
A+ ++ + +D KI I + + I L+
Sbjct: 252 AQRAMDALKKDDKILIRNKQAIVRVLE 278
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 31.1 bits (67), Expect = 0.52
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Frame = +1
Query: 100 LTKLGAEVAYIDFKSGDTEGWVRLSKENAAKEMVEKIEDGKIKICDSEVIFN------CL 261
+ K + +DF+ G+++ +V+LS K+ + I+D + D + F L
Sbjct: 5 VVKSAVNLPNVDFR-GESDPYVKLSFRGEEKK-TKVIDDNLNPVWDEDNEFEWSLGGGTL 62
Query: 262 KVTMRKRISLKPWKR*PKNAGT*GITSSVKERISKGDKAVERESPKI 402
+ ++S+K W P +T ++KE + D A+E+E P +
Sbjct: 63 SLDDTLKVSVKDWDLCPPRKLLGQVTIALKELLKTKDYALEKEYPLV 109
>SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 30.3 bits (65), Expect = 0.90
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 52 FSEVNEKMKREDLKDALTKLGAEVAYIDFKSGDTEGWVRLSKENAAKEMVEKIEDGKI 225
FS+ + RE K KL ++ KSG RLSK +AA+ ++E +I
Sbjct: 119 FSKARSQASREIRKKFSEKLPQGATFLHTKSGSIVTMFRLSKVDAAESLLEMCNGSQI 176
>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 1788
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = -2
Query: 299 HGFSEIRFLIVTFKQLKMTSESHILIFPSSIFSTISLAAFSLDSLTQPSVSPDLKSMYA 123
HG++ I+ + FK+LK ++ S + S F+ S S+ T +++P ++S YA
Sbjct: 1230 HGYAAIKSMEARFKRLKDSNPSEASKYILSDFNDTS-KYLSIQYFTDNAINPCIESTYA 1287
>SB_24629| Best HMM Match : MORN_2 (HMM E-Value=0.21)
Length = 269
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 262 KVTMRKRISLKPWKR*PKNAGT*GITSSVKERISKGD-KAVERESPKIMKRHLQRKSKRS 438
KV K+ K +NAG S+KER+ K + KA E +SPK K R+ RS
Sbjct: 207 KVAKEKKSKDKDPSEEGENAGEETPKKSLKERLFKKEKKAKEEKSPKQPKEKPAREKARS 266
Query: 439 NQN 447
+
Sbjct: 267 KND 269
>SB_27557| Best HMM Match : Ras (HMM E-Value=0)
Length = 184
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 210 NLFNHFFSGVFFRQSDPTFGVTRFEINVCDL 118
+L F G FF SDPT GV F + V +L
Sbjct: 28 SLLRQFTEGQFFENSDPTVGVD-FHVRVLEL 57
>SB_13923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = -2
Query: 308 HLFHG--FSEIRFLIVTFKQLKMTSESHILIFPSSIFSTISLA--AFSLDSLTQPSVS 147
H+F+ FS++RFL+ + + + +I+ S +FS++ A A + LT+ V+
Sbjct: 47 HMFNNELFSDVRFLVGRSAKQSIPAHKYIMSISSPVFSSMFFAFGALQAEQLTREQVN 104
>SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 221 FPSSIFSTISLAAFSLDSLTQPSVSPDLKSMYAT-SAPNLVRASFKSSLFI 72
F S+ ST S++ SL S +PS S +MY S P R + ++ FI
Sbjct: 735 FGKSLSSTSSISRTSLRSTVRPSASRRQSAMYVKGSTPPTRRTTSSAAFFI 785
>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
Length = 2124
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 115 AEVAYIDFKSGDTEGWVRLSKENAAKEMVEKIEDGKIKICDSEVIFNCLKVTMRKRISLK 294
+E ++ D E +V + EN V++ DG+ IC+S +C++ +K ISL+
Sbjct: 1698 SENSFSDSSEESIELFVDSTSENDVFTAVDEPNDGQEAICES-TSDHCMETISKKDISLR 1756
Query: 295 PWK 303
K
Sbjct: 1757 SSK 1759
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +1
Query: 337 TSSVKERISKGDKAVERESPKIMKR----HLQRKSKRSN 441
T VK R +GD ++RE+ ++ KR +QRKS N
Sbjct: 1648 TEVVKRRGRRGDSEIQRENIELQKRIAELEIQRKSVEEN 1686
>SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.9 bits (59), Expect = 4.8
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Frame = +1
Query: 139 KSGDTEGWVRLSKENAAKEMVEKIEDGKIKICDSEVIFNCLKV----------TMRKRIS 288
++GD W++ SK K+ +K+ +K + + L+ T +
Sbjct: 358 RAGDPVTWIKCSKMGKVKKSRQKLHLKAVKFGQDNLKKDPLQANESSLPSIFPTSGLFAA 417
Query: 289 LKPWKR*PKNAGT*GITSSVKERISKGDKAVERESPKIMKRH----LQRKSKRSNQNSQT 456
+ P KR + +G S+ +++SK DK ER + K H ++ K++ + +QT
Sbjct: 418 VDPSKREEEKSGV--ANSTKPQKVSKTDKRKERHVQFLKKLHAGKLVEESIKKAEKRAQT 475
Query: 457 AL 462
A+
Sbjct: 476 AI 477
>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 909
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +1
Query: 10 EKEELKLPTGSVFHFSEVNEKMKREDLKDALTK 108
EK + K+PT ++FS++ E K+E ++ ++++
Sbjct: 341 EKIQFKMPTFKTYYFSDLLELQKQEVMESSMSE 373
>SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 340 SSVKERISKGDKAVERESPKIMKRHLQRKSKRSNQNSQTALR 465
S+ +ER S+G K ERE +I +R + + + + ++ R
Sbjct: 137 SASRERESRGRKGYEREEDRIRQRREENRQRSQERRAERKQR 178
>SB_4671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 37 GSVFHFSEVNEKMKREDLKDALTKLGAEV 123
GS+F F N + ++ D+KDAL+ G +V
Sbjct: 157 GSIFPFIYFNLRNQKADIKDALSGKGLQV 185
>SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 128 TLISNLVTPKVGSDCLKK 181
TL+SNL+TP G+D L K
Sbjct: 361 TLLSNLLTPSTGNDILLK 378
>SB_8141| Best HMM Match : Rho_N (HMM E-Value=0.011)
Length = 299
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 334 ITSSVKERISKG-DKAVERESPKIMKRHLQRKSKRSNQNSQTALRMFCASEAI 489
+ VK+ + + DK VER +I + H + + + + + QTAL+ + + I
Sbjct: 93 VPEPVKKTVKEAADKRVERLKERIKRLHEEAEDRFTPKEQQTALKGYLKTHGI 145
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 27.1 bits (57), Expect = 8.4
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 55 SEVNEKMKREDLKDALTKL--GAEVAYIDFKSGDTEGWVRLSKENA-AKEMVE-KIEDGK 222
S +NE + R + L + GA+VAY F + T+ V+ SK + + V + E K
Sbjct: 30 SRLNEALVRIHKLEVLLQPSEGAQVAYTSFLNKQTDTNVQYSKRKVDSHDHVRLRRESAK 89
Query: 223 IKICDSEVIFNCLK 264
K D +VI+ LK
Sbjct: 90 AKQPDLDVIYERLK 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,906,812
Number of Sequences: 59808
Number of extensions: 209731
Number of successful extensions: 774
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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