Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0585.Seq
(492 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 31 0.60
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical pr... 30 0.79
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 30 0.79
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 30 0.79
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr... 30 0.79
Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical p... 30 0.79
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 30 0.79
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 30 0.79
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr... 30 0.79
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein. 30 0.79
U41270-5|AAA82442.2| 364|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 29 1.8
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 29 1.8
Z83109-2|CAB05517.1| 372|Caenorhabditis elegans Hypothetical pr... 29 2.4
U88170-7|AAO26016.1| 403|Caenorhabditis elegans Pantothenate ki... 27 5.6
U88170-5|AAB42246.2| 449|Caenorhabditis elegans Pantothenate ki... 27 5.6
U39849-7|AAA81049.2| 473|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z81041-1|CAB02786.2| 362|Caenorhabditis elegans Hypothetical pr... 27 7.4
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 27 7.4
AF039713-1|AAB96725.1| 268|Caenorhabditis elegans Hypothetical ... 27 9.8
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 30.7 bits (66), Expect = 0.60
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -2
Query: 314 FGHLFHGFSEIRFLIVTFKQLKMTSESHILIFPSSIFSTISLAAFSLD 171
+G F+ +RFLI K L+ T+ + +FP S+F T L AF D
Sbjct: 321 WGMDFYDMVPMRFLIFNKKTLEFTTSKPLEVFP-SMFVTHQLNAFEAD 367
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 30.7 bits (66), Expect = 0.60
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -2
Query: 314 FGHLFHGFSEIRFLIVTFKQLKMTSESHILIFPSSIFSTISLAAFSLD 171
+G F+ +RFLI K L+ T+ + +FP S+F T L AF D
Sbjct: 321 WGMDFYDMVPMRFLIFNKKTLEFTTSKPLEVFP-SMFVTHQLNAFEAD 367
>Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 245 TSESHILIFPSSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSS 81
T S I+ PSSI S +S + S + T +V+P ++ +T N++ A+ S+
Sbjct: 581 TPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSSTVPSTPVSNVMAATISST 635
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 245 TSESHILIFPSSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSS 81
T S I+ PSSI S +S + S + T +V+P ++ +T N++ A+ S+
Sbjct: 581 TPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSSTVPSTPVSNVMAATISST 635
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 245 TSESHILIFPSSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSS 81
T S I+ PSSI S +S + S + T +V+P ++ +T N++ A+ S+
Sbjct: 584 TPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSSTVPSTPVSNVMAATISST 638
>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 245 TSESHILIFPSSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSS 81
T S I+ PSSI S +S + S + T +V+P ++ +T N++ A+ S+
Sbjct: 581 TPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSSTVPSTPVSNVMAATISST 635
>Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 245 TSESHILIFPSSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSS 81
T S I+ PSSI S +S + S + T +V+P ++ +T N++ A+ S+
Sbjct: 581 TPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSSTVPSTPVSNVMAATISST 635
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 245 TSESHILIFPSSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSS 81
T S I+ PSSI S +S + S + T +V+P ++ +T N++ A+ S+
Sbjct: 581 TPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSSTVPSTPVSNVMAATISST 635
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 245 TSESHILIFPSSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSS 81
T S I+ PSSI S +S + S + T +V+P ++ +T N++ A+ S+
Sbjct: 584 TPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSSTVPSTPVSNVMAATISST 638
>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 245 TSESHILIFPSSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSS 81
T S I+ PSSI S +S + S + T +V+P ++ +T N++ A+ S+
Sbjct: 581 TPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSSTVPSTPVSNVMAATISST 635
>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
Length = 1016
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 245 TSESHILIFPSSIFSTISLAAFSLDSLTQPSVSPDLKSMYATSAPNLVRASFKSS 81
T S I+ PSSI S +S + S + T +V+P ++ +T N++ A+ S+
Sbjct: 581 TPVSEIISPPSSIHSQLSFPSVSNTTTTTATVAPTSSTVPSTPVSNVMAATISST 635
>U41270-5|AAA82442.2| 364|Caenorhabditis elegans Hypothetical
protein AH9.4 protein.
Length = 364
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -1
Query: 450 AILVTALGLSLXVPLHYFRAFSFYRLVSL*NSFLYRTCYSSCSCVFWS 307
+IL++ L L L +P H FRA++ Y SL N + RT +++S
Sbjct: 277 SILISVLNLLLNLPSHIFRAWASYDESSLENE-IVRTLEPIAQMMYFS 323
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
protein LIN-59 protein.
Length = 1312
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 337 TSSVKERISKGDKAVERESPKIMKRHLQRKSKRSNQN 447
TSS+ S D E ++ K+ KRH+QR KR +N
Sbjct: 1271 TSSIDPPQSSSDGLPEVDTKKLSKRHIQRVLKRLVKN 1307
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 337 TSSVKERISKGDKAVERESPKIMKRHLQRKSKRSNQN 447
TSS+ S D E ++ K+ KRH+QR KR +N
Sbjct: 1271 TSSIDPPQSSSDGLPEVDTKKLSKRHIQRVLKRLVKN 1307
>Z83109-2|CAB05517.1| 372|Caenorhabditis elegans Hypothetical
protein F44G3.2 protein.
Length = 372
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = +1
Query: 55 SEVNEKMKREDLKDALTKLGAEVAYIDFKSGDTEGWVRLSKENAAKEMVEKIEDGKIKIC 234
S++ + ED+ D +T E AY+ D L K+N K+++EK++ K+
Sbjct: 3 SQIRGSKQHEDV-DPVTIKKIEEAYVMLNGPDGAKCSSLLKKNLTKDVIEKLKTKSTKL- 60
Query: 235 DSEVIFNCLK 264
+++C++
Sbjct: 61 -GANLYDCIR 69
>U88170-7|AAO26016.1| 403|Caenorhabditis elegans Pantothenate
kinase protein 1,isoform c protein.
Length = 403
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 240 RIAYLNLSIFNLFNHFFSGVFFRQSDPTFGVTRFEIN 130
++AYL + +NL +F G F RQ T F IN
Sbjct: 334 QMAYLYGTRYNLKRIYFGGYFIRQDPITMRTLSFAIN 370
>U88170-5|AAB42246.2| 449|Caenorhabditis elegans Pantothenate
kinase protein 1,isoform a protein.
Length = 449
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 240 RIAYLNLSIFNLFNHFFSGVFFRQSDPTFGVTRFEIN 130
++AYL + +NL +F G F RQ T F IN
Sbjct: 380 QMAYLYGTRYNLKRIYFGGYFIRQDPITMRTLSFAIN 416
>U39849-7|AAA81049.2| 473|Caenorhabditis elegans Hypothetical
protein C06A8.2 protein.
Length = 473
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Frame = -2
Query: 374 LSPFEILSFTELVIPHVPAFFGHL-----FHGFSEIRF-LIVTFKQLKMTSESHILIFP 216
L+P E L FTE ++ H +FG + F F E F + V + + H+ P
Sbjct: 54 LNPAECLEFTEYLLQHAAMYFGKVNEVGAFRAFKERLFGVYVCYALYNLQPVDHVCQIP 112
>Z81041-1|CAB02786.2| 362|Caenorhabditis elegans Hypothetical
protein C27A7.2 protein.
Length = 362
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 46 FHFSEVNEKMKREDLK 93
FHFSE NE + +ED+K
Sbjct: 327 FHFSEFNETIHKEDVK 342
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/87 (21%), Positives = 45/87 (51%)
Frame = +1
Query: 1 QQQEKEELKLPTGSVFHFSEVNEKMKREDLKDALTKLGAEVAYIDFKSGDTEGWVRLSKE 180
+++E ++K P + ++ E+++R L D+ G E ++ K+ + + +R+S+
Sbjct: 70 EEEEDVQIKYPYERKDAYQDLQERIERR-LNDS----GDEK--LEQKAKELQSLIRMSQS 122
Query: 181 NAAKEMVEKIEDGKIKICDSEVIFNCL 261
E +++ED +K + IF C+
Sbjct: 123 QWKVEQKQQLEDSLLKPHTAGSIFTCV 149
>AF039713-1|AAB96725.1| 268|Caenorhabditis elegans Hypothetical
protein F57B10.8 protein.
Length = 268
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 151 TEGWVRLSKENAAKEMVEKIEDGKI 225
+EGW+ L K+ AK + E+I++ I
Sbjct: 129 SEGWMELKKKKIAKAIAEQIDNTPI 153
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,025,171
Number of Sequences: 27780
Number of extensions: 163334
Number of successful extensions: 732
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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