Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0584.Seq
         (485 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.1  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   3.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.4  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   4.5  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 291 GNKDSLVVINRKV 329
           GNK S++V+NRK+
Sbjct: 93  GNKRSIIVVNRKM 105


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 110 LRWFVAINFVACLSLLCASLDT*YSI 33
           +R+FV I FVAC+S+  A  +  Y+I
Sbjct: 1   MRFFV-IFFVACVSVALARPEDQYTI 25


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 290 RQQGQFSGNQQEGAYRRVMNXRKNQESNDG 379
           R  G F GNQ EG+    +N  + +  ++G
Sbjct: 593 RYLGDFEGNQVEGSPVTSLNREEIKRLDNG 622


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 137 WCERLW*SSNGQQ 175
           +C+R W   NGQQ
Sbjct: 41  YCDRYWECVNGQQ 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,779
Number of Sequences: 336
Number of extensions: 1867
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)