Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0584.Seq
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3...    31   0.12 
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    28   0.65 
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   6.1  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.0  

>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 230 FWK*TNGQRPDRGQQGRPDFRQQGQFSGNQQEGAYRRVMN 349
           F+  TN Q   + QQG P F  +  FS +Q E  +  +MN
Sbjct: 82  FFSRTNPQPQSQSQQGGPSFGFRQSFSDSQFEQVFNEMMN 121


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 188 PPTLSVAHLTITKAFRTIPSLLLI-VELRWFV 96
           P  L +AHL + +   T+P +L++  +LR+FV
Sbjct: 486 PSNLDIAHLKLGEFLNTMPDILILPSDLRYFV 517


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 347 NXRKNQESNDGPPNXRQNFNQPKEXMRXEFVGVTV 451
           N RKN + ND       N N PK+       G T+
Sbjct: 102 NGRKNGQKNDDSKKKGLNGNDPKKVFEIALNGNTI 136


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 46  VSRDAHNKLRQATKLIATNHRSSTINSKLGMVRK 147
           V+RDA+N+L    K   TN + S ++S   + R+
Sbjct: 2   VNRDAYNELNLNKKSQETNRKPSPLSSYTSISRE 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,513
Number of Sequences: 5004
Number of extensions: 28906
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)