Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0584.Seq
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0172 + 1362101-1363708                                           29   2.0  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    29   2.6  
02_05_0506 + 29613307-29613601,29613641-29613678,29613679-296138...    28   3.5  
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169...    28   4.6  
08_01_0013 + 99251-100663                                              28   4.6  
04_03_1013 - 21714804-21714896,21715202-21715241,21715629-217156...    28   4.6  
07_03_1204 + 24855052-24855210,24855411-24855974,24856157-248562...    27   8.0  

>06_01_0172 + 1362101-1363708
          Length = 535

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -1

Query: 260 PVVARLSISKTKMSLLPHILPAVLPPTLSVAHLTITKAFRTIPSLLLIVEL 108
           P+   L +    +S LP   PA+LPP LS        AF   P L L+  L
Sbjct: 86  PLPPSLPVFAAVLSRLPAADPALLPPVLSALRAANLPAFSDRPFLPLLRSL 136


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 281  PDFRQQGQFSGNQQEGAYRRVMNXRKNQESNDGPPNXRQNFNQ 409
            PD  +Q    GN + GA    +N  +N  SN G    +  +++
Sbjct: 1407 PDGNKQSSVDGNSESGAAIDSINDEQNSNSNSGAEEIKIKYDE 1449


>02_05_0506 +
           29613307-29613601,29613641-29613678,29613679-29613802,
           29614358-29614484,29614915-29615002,29615539-29615631,
           29616380-29616529
          Length = 304

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 282 GLPCCPRSGRCPFVYFQNQNVLVASHLACRFAPHPVCCPFD 160
           G P    S    F+ F  Q +L+A+HLA    P  V  P D
Sbjct: 188 GFPVPQYSNMFQFMEFHPQQILLANHLASSARPFLVGVPLD 228


>11_03_0226 -
           11908455-11908562,11915971-11916240,11916463-11916946,
           11917148-11918060,11918628-11919300
          Length = 815

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 266 GQQGRPDFRQQGQFSGNQQEGAYRRVMNXRKNQESNDG 379
           G  G  D  + G+ +GN++EG + R MN     +  DG
Sbjct: 569 GDDGGLDNMEDGKENGNEKEGDHMRDMNSGMILDGQDG 606


>08_01_0013 + 99251-100663
          Length = 470

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 270 CPRSGRCPFVYFQNQNVLVASHLACRFAPHPVCCPFDDYQSLSH 139
           CPR GR      Q++   VA +  C   P P+    DD  +++H
Sbjct: 409 CPRRGRDRDFMMQSREQYVADYQPCTIPPPPLTA--DDATNMAH 450


>04_03_1013 -
           21714804-21714896,21715202-21715241,21715629-21715691,
           21716381-21716484,21717085-21717187,21717647-21717717,
           21718830-21718925,21719174-21719305
          Length = 233

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 218 LLPHILPAVLPPTLSVAHLTITKAFRTIPSLLLIVEL 108
           +L H++PA+L   LS+ H  + K  + +  LL  + L
Sbjct: 20  ILGHLMPAILKAILSLDHKNLLKGTKIVKYLLACMPL 56


>07_03_1204 +
           24855052-24855210,24855411-24855974,24856157-24856225,
           24856304-24856426,24856733-24856864,24857143-24857266,
           24857547-24857614,24857849-24857991,24858615-24858722,
           24858826-24858901,24859442-24859578,24859660-24859819,
           24859901-24860080,24860159-24860275,24860540-24860695,
           24861209-24861379,24861479-24861591,24861669-24861792,
           24861961-24862056,24862139-24862201,24862299-24862364
          Length = 982

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 219 LVASHLACRFAPHPVCCPFD-DY 154
           L+  HLAC    HP+C  +D DY
Sbjct: 622 LLEQHLACAAYEHPLCVQYDADY 644


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,058,071
Number of Sequences: 37544
Number of extensions: 201081
Number of successful extensions: 539
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)