Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0584.Seq
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54169| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                28   4.7  
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                28   4.7  
SB_44791| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   6.2  
SB_23137| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   8.2  
SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)                  27   8.2  

>SB_54169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 424 HXFFWLIKVLSLIRRTIVRFLILPXIHNSSISTFLLITTKLSLL 293
           +  F +I V+ +I   I+  +I+  I  +S STF  ITT + L+
Sbjct: 14  YQLFIIIVVIIIISYIIIYTIIINIIDTNSASTFTFITTIVCLI 57


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -3

Query: 219 LVASHLACRFAPHPVCCPFDDYQSLSHHPQFAVD---CR-TSMVCCD*LCCLSELVVC 58
           L+  ++ CR+A   +CC + D     +     VD   CR  +M+C D L C    VVC
Sbjct: 186 LICCYVVCRYAVMSICC-YVDMLLCRYAVMSCVDMLLCRYAAMLCVDMLLCC--YVVC 240


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 269 QQGRPDFRQQGQFSGNQQEGAYRRVMN--XRKNQESNDGPPNXRQNFNQP 412
           QQ +P+F+ QGQ S +Q    +++  N   + NQ    G  +  Q  NQP
Sbjct: 283 QQQQPEFKNQGQNSSSQPNQPWKQGQNSSSQPNQPWKQGQSSSSQP-NQP 331


>SB_44791| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 415

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -1

Query: 260 PVVARLSISKTKMSLLPHILPAVLPPTLSVAHLTITKAFRTIPSLLLIVELRWFVAIN 87
           PV A+L+I    + +LP +  AV P   S  +    +AF+ I   L ++    F A+N
Sbjct: 306 PVKAQLAIGTVFVYVLPLLNSAVNPIIYSSFNANFRRAFKDILFRLCVLHKGQFDAVN 363


>SB_23137| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1022

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 288 KSGLPCCPRSGRCPFVYFQNQNVLVASHLACRFAPHP 178
           KSG+ C P S +CP  ++ N         A  F  +P
Sbjct: 191 KSGISCQPWSSQCPHRHYHNSTQYTELINASNFCRNP 227


>SB_7145| Best HMM Match : RVT_1 (HMM E-Value=3.8e-25)
          Length = 455

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 179 LSVAHLTITKAFRTIPSLLLIVELRWF 99
           + V HL I+KAF  +P  LLI +L+ +
Sbjct: 216 IDVIHLDISKAFDKVPHHLLIFKLQQY 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,628,436
Number of Sequences: 59808
Number of extensions: 223829
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)