Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0584.Seq
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    31   0.59 
U53150-10|AAA96130.3|  433|Caenorhabditis elegans Hypothetical p...    30   1.0  
Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z69791-2|CAA93661.2|  919|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL110484-21|CAB54413.1|  234|Caenorhabditis elegans Hypothetical...    27   5.5  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z11505-10|CAA77588.2|  590|Caenorhabditis elegans Hypothetical p...    27   9.5  
U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified vi...    27   9.5  
AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm rece...    27   9.5  

>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
            protein F52G3.1 protein.
          Length = 1172

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = +2

Query: 290  RQQGQFSGNQQEGAYRRVMNXRKNQESNDGPPNXRQNFNQP 412
            RQQ Q    QQ       MN   N  SN GP   +QNF QP
Sbjct: 1016 RQQQQQQQQQQSSGQSHPMNGMGN--SNGGPQFPQQNFTQP 1054


>U53150-10|AAA96130.3|  433|Caenorhabditis elegans Hypothetical
           protein F20A1.9 protein.
          Length = 433

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 31  KIEYYVSRDAHNKLRQATKLIATN-HRSSTINSKLGMVRKAL 153
           K+ + V  D HN+ R  TKL+ T   R+     K G +R+ L
Sbjct: 204 KLPFAVEEDVHNEFRMHTKLMLTELKRTQCKQDKDGSIRRTL 245


>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = -2

Query: 463 LLLXNGDSYKLXSHXFFWLIKVLSLIRRTIVRFLILPXIHNSSISTFLLITTKLSLLPKV 284
           +L+       L S+    +   +  I   ++  LI+P + + +   F++++T  +LLPK 
Sbjct: 24  ILIIKKSPKTLGSYKILMIYIAIFDIFYAVIDALIVPKMFSYNSGAFIIVSTNEALLPKS 83

Query: 283 W 281
           W
Sbjct: 84  W 84


>Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical
           protein F39D8.1c protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 251 QRPDRGQQGRPDFRQQGQFSGNQQEG 328
           Q   + QQ + +  QQG F GNQQ G
Sbjct: 426 QNVQQNQQNQQNMGQQGNFQGNQQGG 451


>Z69791-2|CAA93661.2|  919|Caenorhabditis elegans Hypothetical
           protein F39D8.1b protein.
          Length = 919

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 251 QRPDRGQQGRPDFRQQGQFSGNQQEG 328
           Q   + QQ + +  QQG F GNQQ G
Sbjct: 421 QNVQQNQQNQQNMGQQGNFQGNQQGG 446


>Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical
           protein F39D8.1a protein.
          Length = 945

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 251 QRPDRGQQGRPDFRQQGQFSGNQQEG 328
           Q   + QQ + +  QQG F GNQQ G
Sbjct: 444 QNVQQNQQNQQNMGQQGNFQGNQQGG 469


>Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical
           protein R07B7.3 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +2

Query: 251 QRPDRGQQGRPDFRQQGQFSGNQQEGAYRRVMNXRKNQESNDGPPNXRQNF---NQPKEX 421
           ++P R QQ +P F+QQ      QQ+   ++V+  R  +  N  PP  R N     QP + 
Sbjct: 277 RQPQRFQQQQPRFQQQPPRFQRQQQPQQQQVV--RSVRYVNARPPVQRNNVVRQVQPVQY 334

Query: 422 MRXEFVGVTVXKKKXRMF 475
              ++V   V   + R F
Sbjct: 335 RPVQYVTDQVVNSRGRGF 352


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 248  GQRPDRGQQGRPDFRQQGQFSGNQQEGAYRRVMNXRKNQESNDGPPNXRQNFNQP 412
            G +P   QQ      QQG  +G QQ  + +  MN ++ Q    G P  +Q+F+ P
Sbjct: 2761 GNQPPNYQQPSHQSMQQGHQAGYQQT-SNQMQMNMQQQQNRQQGGP--QQSFSGP 2812


>AL110484-21|CAB54413.1|  234|Caenorhabditis elegans Hypothetical
           protein Y38E10A.21 protein.
          Length = 234

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +2

Query: 257 PDRGQQGRPDFRQQGQFSGNQQEGAYRRVMNXRKNQESNDG--PPNXRQNFN 406
           P RG     +FR+  QF G        R     +NQ + +G  PP    N N
Sbjct: 9   PVRGLHSEQNFRESSQFFGVLSFVMRERRRRSNENQSNGNGSTPPTSANNMN 60


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 270 CPRSGRCPFVYFQNQNVLVASHLACRFA 187
           C  S +CP  YF NQ    AS L C F+
Sbjct: 663 CRYSLQCPSPYFCNQRGQQASGLVCTFS 690


>Z11505-10|CAA77588.2|  590|Caenorhabditis elegans Hypothetical
           protein F59B2.11 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 248 GQRPDRGQQGRPDFRQQGQFSGNQQEGAYRRVMNXRKNQESND 376
           G R  RG++ RP   + G+ S N + G  R   N  +++E+N+
Sbjct: 116 GGRGGRGRRPRPQNSESGEDSDN-RSGGRRGQSNQYEDEETNE 157


>U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 3 protein.
          Length = 755

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 HRSSTINSKLGMVRKALVIVKWATDRVGGK 192
           H +  +  K   ++ A++  +W  DR+GGK
Sbjct: 710 HTNFNVQFKCDSLKAAVIKTQWLADRLGGK 739


>AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 205 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 463 LLLXNGDSYKLXSHXFFWLIKVLSLIRRTIVRFLILPXIHNSSISTFLLIT 311
           LL+      +L ++ F  +   +  +   IV  L+LP  HN+   TF+++T
Sbjct: 29  LLIIRKSPKELGAYKFLMIYISILEVLYAIVDILVLPIFHNTGF-TFIILT 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,431,247
Number of Sequences: 27780
Number of extensions: 175154
Number of successful extensions: 601
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)